| Id Trinity | TRINITY_DN48485_c1_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_363164 |
| Sequence | GGAGAGAAAGGAAAGGAAGAATTGAAAGAAAAGGAAGAACTGAAGGAAGAGGAAACTAACATTATTGCACACAAAGAGCAATCTAGTACTGTGTCTTTTA GTGCAGGAGTGAAAGATCAATTGCAAACGGACGTTAGTCCTGAAAAGGATGTTGATGAAGTAATGAAGGGTAGTGAAAAGTTAGATCTCGGAGAACAAGA TGGAGAGGACTTTATTGAGGAAGACCCTGAGGAACCTCCCGATGAACCTGAGGCATTCGAAGAGCAGCATATAGAATATGAGGCAATTGCAAAACAGCGA CAAGTTAACAAAGAACATGAGATATTTGTGGGAGGGCTGGATCGTGATGCTACAGAGGAAGATCTGAGAAAGGTTTTTGAGAGGATTGGGGAGGTAGTCG AGGTCAGGTTGAACAAAAATTCTTCAACAAATAAAAATAAGGGCTATGCATTTGTGAAGTTTGCTAATAAGGAACACGCAAAAAAGGCTTTGTCAGAAAT GAAGAACCCTGTTATACATGGTAAACGATGTGGCACTGCACCCTGTGAGGATAATGACACATTATTCTTGGGAAATATTTGCAATACATGGACTAAAGAA GCTATTAAACAGAAGTTGATGGATTATGGTATTGAAGGGGTTGAAAACATTACGCTTGTCCCAGATGTTCAACATGAAGGGTTGAGCCGAGGTTTTGCAT TCGTTGAGTTTTCTTGTCATACTGAGGCCATGGTTGCATACAAGAGGCTTCAAAAGCCTGATGCCATCTTTGGCCATGCTGAGCGAACTGCCAAGGTAGC CTTTGCTGAACCCATACATGAACCAGACCCGGAGACGATGGCACAGGTGAAATCTGTGTTTATTAATGGTCTACCTCCTCACTGGGATGAAGATCATGTT AGGGAACTGTTAAAATCTTATGGTGAAATTGTTAGAGTAGTACTAGCACGGAATATGTCTACAGCTAAGAGGAAGGATTATGGATTTGTTGATTTCTCTA CACATGAAGCTGCTGTAGCTTGTGTTGATGGTGTAAATAAATCAGAATTGGGTGACGGGGTGTCAAAGATAAAAGTGAGAGCCAGGCTTTCAAATCCTTT GCCTAAAACACAGGCTGTAAAAGGTGGCATGTCTGGTGGGTTTAGAATTGGTCATGCTAGGACTGGAGCTCTTCCAAGACCTGGAAGGGGTTTTGGGCGT GGAAGACAGCCTTTCAACAACTGGGGAAATTTCAACAGGGATAGGAATTTCTATCGTGGTCGTGGTGGATACAGTCAATTTGGAAGAATGGGTTCTCGGG ATGACCGCAATTTTAATATGCATCCAGATTTCCATCATAGGCAATTTGGAGCTGTGAGAGGTGGGCATTATCCACGTAGCCGAGGTGCTGCATTTGTCGG TCCATCTAGACATCATGATAGACCTTGGTATGGCATCCCTGATGGAGGTCCTAGGGAACCAATTCCTATGAGAAGGCCCTACTCCCCAGGTGGGCAGTTT GACAGGCCTTTTATTGGACAGCATTTTGATGATCCATATCTCCATGATGACAATTTGCATGGGGTGAAACGTCCATTTTATATGACTGAGCCTGAACCTG ATTACATGGGACCTAGTAGACTTCGACCTCGACTGGACTACGCAGATCCAGCTTTGTTACATGGAAATCGTTACCATGATCCTTTTGGGGAAGCCAGCAC ACAGTACCCACCTGACCATTATCATTATGGTTCAGATTATGGTGGAGGTCCATATTCATCTTTTTATGAGGGTGATAGCTCACATGGGCATGGATACCAC TATTAGCCTGAAGAACCTTTCGGTGGGATCTGGAACTGTGGAATGGACTTCTTCAATTATGAGCATGCTGCTTGAGCATAACATTTTGAAGTCACATGTT GCTTTTGTACACTTGTTTCTTATTATATCCCTTGGGTTCTATTTATATAATCTGCTAGACCATATGTGCTATAGACTAAGTGACTTAATGTGTGGGGTAG GCTGTCTCTCAGGTCCTGGACTAAGGTATTAATTAATAAGATCTTATGTGGAGTGGACTAGGTTTCCTTTATTTACTTTGGTACGATGGGATCATGGACC TAAGTTTGAGGATGCTTTATGTATGTACAATACAACTTTACTCATAAGTATAACTTTGATGATTGGAAAGTTTATAGGACTACTGGAAGCAAAAACTTTC ACTTGATGGATTTATCTTTTGGCAATTTGATAGGCAAGTTTTGATATTTCAATATGCGTATGGAGTCTCTTATGATTCATATGAAAGTTTTGAAGAGTTA ATTTTACTTTCATATTAGGAGCCATATTTTGTGATCTGGACTACTTTGGAGTTTGTTTGACTGATTAGGTGGGTTTCTTGTAAGTATTTATTGATGTCCA TATGAAAGCACTCTTTTTATGACAGTCTTTATTGAATTTGCTGCAAGATAGGACCATGGACTAAATACAGTGAAAGGTTAACCTTTATTTGAAATGATGA TCATGGATGCTTTTGTGGTTATGGAGCACAGGATCAAGTTGATTGATTTGGTTCCTTATGATACAAAGTCATTGGTAATTTGGGTATCCTTGAGTAGGTG TTCATGTTTTAAATCTTTTGATGTGCAGCACTGGCACTTGCTGAGAATAAAATATCTGTAGATATAGTGTGAAATGTCCAATGGTATGGGCATCTAAGGA TGTGTGTTAATGTTTTGCTTGTCATCTATATTTTCCTTGGATGGCTTTTGAAAAAATACTGTCACTAAGCAAATGGATCTGTGGAGAAATATTAATCGGC TGTTTCTCTCTCTCTCTCTCTCTAATGGCTGATTATAATGAATAAGTGGTAGGTGCTAAGTGATAAGAGTGTCACTTTGGGAATAACATGGAGCGGAAGC AATTACCGATTAGTTAGGTTTGTGATAAATAGGGTGTTTCTGCTTTGTTATCAAAGGAGGGAGCTGGCCTCAAATTGGTGCTGTCCTTCTAGAATAGTTA GGATATGTAAACTGTTGAAGATGGTAGCAGTGGCTTTTTTTAATCCAATTTCAAGCATCATGTGTTTCTGATAGTTTCACAAATTCTGATCTGAGTTTTG TTTGACACGGATAAGGCAATTATCTTTTTTATTGAAAATGTCTTGAATATGAGACCCACATATTGGTACGTATATGTTTGTGTTTGAACAATGTTTTTTA CTCTTATTTCCTTGGTTTAGGTACCTCTACCTTCTATGAGAAGGTTGGTTTAGGTTTTCAGATCAGATTAGCATCATATTCAGTCTTAGTCAGACCAAAG GCTCTATTTGTCCTTTGTTATTTAACTTAACTAGTAGGGCATTATAGTAATTACAAATCTTTTACAAATTTATCAATTAAAAGAATCCAATTGTAGTAAT TTGCACAGTAAGTCAGTAATTGCGATCTGATAGCCTACCTCATACAGAAGATCTCAAGAGACTTCTCCATTTTTTTTCTGTTTATTCAATGGATTTCATC GCAGAAAATTGCTGTATAGGTACAGAGGCAGCTAATACTTGGTATATTGGGATGAAGCATTTATCTTCATTGCATTATAACATTGGCCTGGTGTGCTCCT GTTGGCAGCATGCCAAGGCTTTGGTGAGATGCCTTCCTTCGTCAGCCGGGTTTGAGGTTTACCCGAGTGCTTATTGCCTTCCTCCATTAAAGGATGGTAA TAACCTTTCGAGGAACAGATAAGTATGTGTTTCTGATAGGTCAAATATTTTTTTGCCAAGACTAGGTGCTAAACTTTGTCAGGAGGAGATTTATGTATGT GTTGCCTCTTGAAATGGTTTAAATTTCATTTGTTCCGCCTTAATCATTTTGCATGAAGTGTGGACAACTTTTTATTTTCTTTGGGGGCTGTTGTATAAAT GGAATCAGTATGAAAAGTTCGGTATATATTTATGGATGTTCATTTTCTGCAATAGAGAACCTTGGAATTTTGAAGTTGAGATGACTAGATTCTTCTTTAA GCAAATCATCTGCAATTAGAGCAAAATCTAATAGAAAATGTGTGCTTCTAATGTTAGATTGTGTCAAAAATGCTTGAAACTTTTTTGTATCCCTGCTAGA CATGTATTTCATCATGCTACAGGTATGCTTGACAACTTTGCATAATTTGAGCCATGATTGGTAATGTTTGACACAAAATTGATGATCTCTGCATTTTTTA TCTTCTGGGTCCCTGTTGTGTTTTTCTTTAGGTTTCCATGCCATTCAGCTTTTGTGACATCATTCTAACACAGGAACTGTGTAAAGTAGGATCAGCCTTT GGTGTTGTTACTGCCATGAAGGGTGTTGGTGTGGCCTCTAATGTGCAAATTTGCCCAATCTGCATTGGAGTCTCATGTCCTGAAGGGAACTGGAAGATGG GAAAAGAAGACCTTTTCAGGGTGAACCCTTAAGATATTTGAGGATTCTGAATGCAGCATCTAGATGTGTCACTATTGGTTTCTGCATGAATTGACTCACG GCTCCAACAAGATAGGCAATGTCGCCCCCGGACTGCCGGATCCCATGAGTAAATAGAAAGTTGGATCTACGTTGGAACTCATTTGAATTGCCCCATCTAT CTTCTTGAGAAGTTTGGTTTCAAACTCGAGTTCCAACTAAAGTACACCATGCTAATGTGCCTTTGATGATCCACATCTCTGCAACGATCATTTGCATGGA CCCACTTCTCATTCGATTTTTGGGAATTTGATGATCTATAAACCATCCCTAACGATCTATCACCTCATTTTTTAGCATGATGAATCACTTTGTTGCCATT AA BLAST |
| Tissue | pods |
| Gene name | LI_gene_161442; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_363164
| Blastp | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 34.29% of identity |
|---|---|
| Blastx | Heterogeneous nuclear ribonucleoprotein Q from Arabidopsis with 34.29% of identity |
| Eggnog | RNA binding motif protein(ENOG410XTJ5) |
| Kegg | Link to kegg annotations (AT4G00830) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019423517.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |