Id Trinity | TRINITY_DN48506_c3_g2_i14 |
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Name Transcript | Ll_transcript_337149 |
Sequence | TGAAAAGACAAAACAAACTTGTGAAACATCAGAACTTATCAGAATAACAAAACTGTGTATGTGGATTGTGGACTACAAAGGTGGTCATAAATGGGGCCAC TTTTATGAGATGGCTAACGTTGAATGATTCTGTTCCGTTTCGCAACTGAACTTTGTGCTATGTGGTGTCTTCCTCCGAACTGAAACAACAAATCAAAACC AATTACCTCAATCCATTTCCACCAATCTCATTATTCTCAATCTCATCCAACCAAAATTTGAAACCCCAAAACCCCATTTTGCAAAGCAATTCGTTTAAGT CCAAGGATAACAACAACAGTGCAGAGATTCAGCACTACCCTTTTCAAAATTCACTCACTTTATCAGGTGTGAAAATTGAAAGATGAGGTGAACGGCACCG TTGGTTATTCTGGTGCACTAGCTAATGTCGTTTTGGCTCCTTCATCAGCACTCAACAGAACATGTATTGCCGCTTATTGCTATTCCTATCTGATTTTTCT CATTCCACTTGAAGGAGCATTTCTAATCTCTCCTGTCTGACTTGGTTTCTCTACTTGTTATAACTCGGTTGTAATTAAAAGAACACACTCTCTCACCAAG ATACTCTCTCCCACCCTGGTGGGAAGACGCATCAACTATGTACAATGCATATTTCAGCTCAACGATATATGCGGTTAGGTGTAAAGAGTCATTCACTTTA TCTTCCAATGGCTACTCAAATTTATGGTATGGAAGATTTGAAAGAACCCCATCACATTGTTCATCCCGTTGTGGTTGTTGTGATTTCTGTTCACTCTCCA CTTACAGAGTGCCCGTAAAGTCCAGTCTTCTAAGTGGGCTGAGGCAATCTACTCTCATTCATTTTCCAGCTTCTAGAAGGATGATTTTGGGTGGTGGAGA CCTGTACTTTTCCCGACTACCATCTTTTGATCTCCATAGAGGTTGTTCTGAGCTTAACTATTCTGTTCACGAGATAACTGTTTGCAATAGAAGTACAAGG AGAACAAAGGGAAGATGTTTGTGTACGGCTCCACGAAAAGGAAGGGAAATATGCCACACAATTGATTCTGATGATGTTGAATCAGTTCTCAGCTTATTGA GTGAAGAAGCAGATAAGGATTCTAGCAGTATCAAATTGAAGAGCGTGTCTTCACCCAAAATAATGGAAGCAGAGAAGAAAAGAAAAAATGTGATCAAAGA GAGAAATTTGAGTTTAAGTAAGAAAGTAGAAGCAAAGAAGAAAGGAAATTTGAAGCTACATGAGACATCCACTATAGACTTGAGAAGCGAGAATGAAAAA CCCTGCAAAGAAAGGGAAACCTTCAATAAAAGTGAGAACCATAGGAAGCGAAGAGATGTTTCTAGTTGCTCATCTTATTACTCACTTTCATCAGGAGATC TTGCAAGTGACCTGGAAGTTCAATATAAGCATGATTTGGAAGAATTATCAGTAGTATATGAGAAAGATTGTGCAAATCACGAGGGACAAGTAAAGGATGA ACTGAACAGGCAAAGAAATTACTCACAGAAGCTGCATTATGTTCCAAATCAGGAAAGGACTGCATTTAGTGCTAATAATATTGATTGGAACCTAAGGAAG AAGTCTGAAAAGAAACCGACTGACATGACTATGCAAGAAACATTATCCACAAAAGAACACAAAGATAAGCATTCAAGAGCATTTCGAACTCATGAATCTA GTTATGGAAATACATCTATTTCACGCAAGCAAGTCGAATGTGAGGAAGATAATTTATCTTTTGTCAAGGATTTGGATAAGAAAATGGAAAAGGCATATAT TAAAGCAAGGGGGAAAAGAAATCACCAATCTACAGATACACAAGAGTCTGGTTATGATGAAGTTGAAACAACTTTGGCTTCAAAGAAGACATTCAGTGGC AGGGAAGGGAACCATGAGATATCAGAAACATTGTTACGTGAAAGAAGTGATGAACATAAAAAGTTTGTTGGATCTAATTCTACCACAGGAAAGGAAACTT CAGAATCAAAGAGGACATTCAGTGGCAGGGAAGAGAATCCTGAGATATCTGAAACACTTTTACACGAAACATGCGAGGAACGTAAAAAAATTGTTGGTAC TACTTCTACCATTGGAAATAATGTAATAAATAGGAATTCCCAGAAATATATGGGAAAAACAAAAGTTGAGGACACTGATAGAAACTTAAATACTCGAATG AAGAATTTGGCAGAGGAAAAAGTTACAATTTTGAGTTCTGTTCAGGGAGTAAAGGAGCAACAACACCAAAAAGGAGAAAAGATCGTTGCACAGGCTAAAG AGAGCAGAAAGCCTCAGCGATTTTCTGAAGTATCACAAGTTCATGAGAGTAATGTAGACGATACATCCATTGTGACATCCAGAACTAGAATAAATGACTG GGGAGGGAATTCAAACTCAAGCACAGCTGCCAGGGGTACATGGCACCAAATAGATGATAGGACAAATCAGAGTATTCAACACGGGAAAGGGTTTGAACAT GTCAGCACCTTATCAGAAGGGTATGCCAGTGATGAAAAGCAAGTTTCCAGTTCTCAAAGAATTTCTGGGAAGGTGAGGTTCATCCCAAAAAGTAAATCAA TGTCAGTTGTTAAAACCAGAGAGAGCTATTGCCAAACTGATGAAAGGATTACAAATTTTGACTTGTACAGTGAGGGCCAAAGACCAATGATCCTAGCAGT TTCTGATGAAACTGTCTCAAGAGAGGAAGCCAACTTCCATGGATCGTTGAATTTGGTTTCCGAGGCTGGAAAACGTGTTAGATTGGCATCAGGGGACGAA CAGAGTTCAGAAGGAATGCTGACCCCTTCCTCATCCAGATTGATGGGTCGAAGCTCAGTACATGTTGAACTCAATGCTGAAATTGAAAATCCTGGGATCA TCATTGAAAGTTCAGATAGTGGCTCATCTGCTATGTATGACAGTGCCAGAAGAAATCCCATTTTTCTTTCTGGATCATACTCTACAGATGGAATTCATCA GGCCTATAGTGAACCTTCTAACATCATAGATCTGGAAGGTGGTGCCCTTGGTTCAGCTGATCGTTTAGAGAAATCATCCAAACAGTTTGTTGATGAGTTT GTTGAGAGAGTCCGGCATGAAGTCACCACTTCAGAAACACGAGAGCCAGATGTTACTGGAAAAAGGTTGACCATTGAAGATGAAGGAAATCAGATCTTTA GTTCAAGGCAAGAAGGCACTCAAAATGAGTCACAGTTGAAGGAGCGTGGTTCTAGCCATTCCTCTGGGTTTCCTGGGACCAAAGGACCTTCTGATGAAAT GTGGGATGTAAATGAACCATATGTTGAGCAAAGTCTTATAGCTGAAGAACCAGAGATCGGCAAGGAAACTGAGAAAACAATTCTCAGTAGAACTGGGAGG TCCATGTGGAGTATGATTGCAGATGTTGTTCGATTACGTTGGGGCTCACGTACTGGTTCCTCCACTTCAGTTGGAAGATCAGGTGAGAGAAACTCGCCAA ACAAGTCTGATACTGAGACATGGTTTTCAGGGCAGGAGCATGAGGAAACTAGTAAGAGTAATGTAATAAAGGAAACAAGTGTACTACCACAGACCATGAC TTCATCAAAGCCAATTACATCTTATACCCAAAGTGACGGAGACGTGTCTGACACTAAAAGACTGAAGGACAATGGAAAAAATCTTGAAGTTAGATCATCT TCTCCAAATGCATTGGAAAGTGGATCAACATCATTAGGTGCCTCATATGCTTCTGGTGAGGAACATGCTAACTGGAGTGAAGATGGAAAAGATTTGAAAG TCAGTACTTCAGACATAAAAAATGTGGAATTCCCAATTCCGTTGCCTGCCAGAGGGCCTCCTTTTGTTGGGAAAATTGTAAATGTTGGTGGATCTGACAT ATCTGGAAGTGAGCCGATTGTGCCAATCAAAGAACCTGTTGCTGCAGTGCAATTTGAATCGTCTGGCTTAGGGGAAAAGGATGGAGAGTTGAAGCAAAGG AAGTTTCAACGGAACACTCAAGTATTGAGAGATAGGTTTGATGATTGGGAAGAAGCCTACAATGCTGAATTTGAGCAGCGGAGAGTGGATGAAATGTTCA TGAAGGAGGCACTTTCGGAAGCTATGAAAGCTGCTGATACATGGGAGGTCCCTGTTGGTGCAGTTCTTGTGCAGAATGGAAAAGTTATTGCACGGGGATG CAACTTAGTAGAAGAGTTACGGGACTCCACTGCTCATGCAGAGATGATTTGTATCCGAGAAGCTTCAGGTCTTCTTCGAACATGGAGACTATCAGACACT ACACTATACGTCACGCTTGAGCCCTGTCCTATGTGTGCCGGAGCCATTCTTCAGGCAAGAATAGATACTGTTGTGTGGGGAGCTCCCAATAAGCTTCTTG GAGCTGATGGTAGCTGGATTAGGCTTTTCCCTGATGGAGGAGAAAGTTCATCTGAACCAAGAAATATACCACCTGCCCCAGTTCATCCATTCCATCCAAA GATAAAGATAAGAAGAGGAGTCTTGGCCTCGGAATGCGCAGACGCAATGCAGCAATTCTTTCAGCTGAGAAGGAAAAAGAAGAAAGAAGAATCGTCAAAT GACCAATCTTCCCTTCCTATTACTCACCACCACCCCTCCAAGTTTCTTAACAAGATTCATGACATCTTTCATGTGAAACCAAACAGCAGAAACAAGAAAC AAAATAAGCAAAAGCTGCATAACGAGGATGCAATATGATAATCTGCACAGACATTTGCTTCACCAAGAACATAATGGACGTGCACATTCCAGTTTCTCTA TGACATTCCTTTGATTGGTTAAATAAAAATAAAATTATGCGATGTATATAATCTTTAAATTTTACTTTTTTGACTAATTAAACATTCCTTAAATTTTATT TGCTTGACTAATTAGGAGTTGCATAAAAGTGTTACTTGGTGAAGTTACATTGGAATGATGATAGACCATAGTGATATAATAAGAATTGATCTTTG BLAST |
Tissue | pods |
Gene name | LI_gene_161628; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_337149
Blastp | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.63% of identity |
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Blastx | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 34.94% of identity |
Eggnog | deaminase(COG0590) |
Kegg | Link to kegg annotations (AT1G68720) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019460740.1) |
Pfam | Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383.22) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |