| Id Trinity | TRINITY_DN48506_c3_g2_i8 |
|---|---|
| Name Transcript | Ll_transcript_337135 |
| Sequence | CAAAAAAAAAGTTGTCATAAATGGGCCATTTTTCTTTTTTTTCCAAGGTTCAAAGATTCTGTTCTTTCTCACAACTGAACTATGTGCTATTTATCTGCAT GCTTTGCTTGATGTGAAGTGAAGAACAAATCAAATCTAATGAGCTGAACCCATTTCCCACACTCTCTTCCATTTTCCACTTCTCATTTTATTTCTCTCAT TCAACCAAGTCCCTTCACAGAAAGTTTGAAACTCCAAAACCCTTTTATGCAAACCAAATCTTAAGTGCCCAGATAGATTCACCACCACCCTTTTCTAAAG CCAAGTTCTTTCTCAGATAACTTGATTTAACTGTTGAAATATGTCAGTTATTCCGATTTCGCTGAGCCATCTATCAGTACAGCTGTGAAAGTTAAAAGAA AAGCTCAGTTGTAATTAAAATAACACACTCTCTCATCAAGACACTCTATCCCACCCTTGGTGGGAAGACGCGTGCAACTATGTACAACACAAATTTCAGC TCAACGATATATGCGGTTAGGTGTAAAGAGACATTTACTTTATCTTCCAATGGCTACACAAATTTCTCGTATGAAAGATTTGATAGAAACCCATCACATT GTTCATCATGTTGTGGTTGTTGTGATTGCTGTTCATTCTCCACTTACAAAGTGCCTGTAAAGTCCAGTCTTCTGAATGGGCTGAAGCAATCTACTCTCCT TCAACTTTCAGCTTCTAGAAGGTTGATTTTGGGTGGTGGAGACCTGTACTTTTCCCGACTACCATCTTTTGATCTCCATAGAGGTTGTTCTGAGCTTAAC TATTCTGTTCACGAGATAACTGTTTGCAATAGAAGTACAAGGAGAACAAAGGGAAGATGTTTGTGTACGGCTCCACGAAAAGGAAGGGAAATATGCCACA CAATTGATTCTGATGATGTTGAATCAGTTCTCAGCTTATTGAGTGAAGAAGCAGATAAGGATTCTAGCAGTATCAAATTGAAGAGCGTGTCTTCACCCAA AATAATGGAAGCAGAGAAGAAAAGAAAAAATGTGATCAAAGAGAGAAATTTGAGTTTAAGTAAGAAAGTAGAAGCAAAGAAGAAAGGAAATTTGAAGCTA CATGAGACATCCACTATAGACTTGAGAAGCGAGAATGAAAAACCCTGCAAAGAAAGGGAAACCTTCAATAAAAGTGAGAACCATAGGAAGCGAAGAGATG TTTCTAGTTGCTCATCTTATTACTCACTTTCATCAGGAGATCTTGCAAGTGACCTGGAAGTTCAATATAAGCATGATTTGGAAGAATTATCAGTAGTATA TGAGAAAGATTGTGCAAATCACGAGGGACAAGTAAAGGATGAACTGAACAGGCAAAGAAATTACTCACAGAAGCTGCATTATGTTCCAAATCAGGAAAGG ACTGCATTTAGTGCTAATAATATTGATTGGAACCTAAGGAAGAAGTCTGAAAAGAAACCGACTGACATGACTATGCAAGAAACATTATCCACAAAAGAAC ACAAAGATAAGCATTCAAGAGCATTTCGAACTCATGAATCTAGTTATGGAAATACATCTATTTCACGCAAGCAAGTCGAATGTGAGGAAGATAATTTATC TTTTGTCAAGGATTTGGATAAGAAAATGGAAAAGGCATATATTAAAGCAAGGGGGAAAAGAAATCACCAATCTACAGATACACAAGAGTCTGGTTATGAT GAAGTTGAAACAACTTTGGCTTCAAAGAAGACATTCAGTGGCAGGGAAGGGAACCATGAGATATCAGAAACATTGTTACGTGAAAGAAGTGATGAACATA AAAAGTTTGTTGGATCTAATTCTACCACAGGAAAGGAAACTTCAGAATCAAAGAGGACATTCAGTGGCAGGGAAGAGAATCCTGAGATATCTGAAACACT TTTACACGAAACATGCGAGGAACGTAAAAAAATTGTTGGTACTACTTCTACCATTGGAAATAATGTAATAAATAGGAATTCCCAGAAATATATGGGAAAA ACAAAAGTTGAGGACACTGATAGAAACTTAAATACTCGAATGAAGAATTTGGCAGAGGAAAAAGTTACAATTTTGAGTTCTGTTCAGGGAGTAAAGGAGC AACAACACCAAAAAGGAGAAAAGATCGTTGCACAGGCTAAAGAGAGCAGAAAGCCTCAGCGATTTTCTGAAGTATCACAAGTTCATGAGAGTAATGTAGA CGATACATCCATTGTGACATCCAGAACTAGAATAAATGACTGGGGAGGGAATTCAAACTCAAGCACAGCTGCCAGGGGTACATGGCACCAAATAGATGAT AGGACAAATCAGAGTATTCAACACGGGAAAGGGTTTGAACATGTCAGCACCTTATCAGAAGGGTATGCCAGTGATGAAAAGCAAGTTTCCAGTTCTCAAA GAATTTCTGGGAAGGTGAGGTTCATCCCAAAAAGTAAATCAATGTCAGTTGTTAAAACCAGAGAGAGCTATTGCCAAACTGATGAAAGGATTACAAATTT TGACTTGTACAGTGAGGGCCAAAGACCAATGATCCTAGCAGTTTCTGATGAAACTGTCTCAAGAGAGGAAGCCAACTTCCATGGATCGTTGAATTTGGTT TCCGAGGCTGGAAAACGTGTTAGATTGGCATCAGGGGACGAACAGAGTTCAGAAGGAATGCTGACCCCTTCCTCATCCAGATTGATGGGTCGAAGCTCAG TACATGTTGAACTCAATGCTGAAATTGAAAATCCTGGGATCATCATTGAAAGTTCAGATAGTGGCTCATCTGCTATGTATGACAGTGCCAGAAGAAATCC CATTTTTCTTTCTGGATCATACTCTACAGATGGAATTCATCAGGCCTATAGTGAACCTTCTAACATCATAGATCTGGAAGGTGGTGCCCTTGGTTCAGCT GATCGTTTAGAGAAATCATCCAAACAGTTTGTTGATGAGTTTGTTGAGAGAGTCCGGCATGAAGTCACCACTTCAGAAACACGAGAGCCAGATGTTACTG GAAAAAGGTTGACCATTGAAGATGAAGGAAATCAGATCTTTAGTTCAAGGCAAGAAGGCACTCAAAATGAGTCACAGTTGAAGGAGCGTGGTTCTAGCCA TTCCTCTGGGTTTCCTGGGACCAAAGGACCTTCTGATGAAATGTGGGATGTAAATGAACCATATGTTGAGCAAAGTCTTATAGCTGAAGAACCAGAGATC GGCAAGGAAACTGAGAAAACAATTCTCAGTAGAACTGGGAGGTCCATGTGGAGTATGATTGCAGATGTTGTTCGATTACGTTGGGGCTCACGTACTGGTT CCTCCACTTCAGTTGGAAGATCAGGTGAGAGAAACTCGCCAAACAAGTCTGATACTGAGACATGGTTTTCAGGGCAGGAGCATGAGGAAACTAGTAAGAG TAATGTAATAAAGGAAACAAGTGTACTACCACAGACCATGACTTCATCAAAGCCAATTACATCTTATACCCAAAGTGACGGAGACGTGTCTGACACTAAA AGACTGAAGGACAATGGAAAAAATCTTGAAGTTAGATCATCTTCTCCAAATGCATTGGAAAGTGGATCAACATCATTAGGTGCCTCATATGCTTCTGGTG AGGAACATGCTAACTGGAGTGAAGATGGAAAAGATTTGAAAGTCAGTACTTCAGACATAAAAAATGTGGAATTCCCAATTCCGTTGCCTGCCAGAGGGCC TCCTTTTGTTGGGAAAATTGTAAATGTTGGTGGATCTGACATATCTGGAAGTGAGCCGATTGTGCCAATCAAAGAACCTGTTGCTGCAGTGCAATTTGAA TCGTCTGGCTTAGGGGAAAAGGATGGAGAGTTGAAGCAAAGGAAGTTTCAACGGAACACTCAAGTATTGAGAGATAGGTTTGATGATTGGGAAGAAGCCT ACAATGCTGAATTTGAGCAGCGGAGAGTGGATGAAATGTTCATGAAGGAGGCACTTTCGGAAGCTATGAAAGCTGCTGATACATGGGAGGTCCCTGTTGG TGCAGTTCTTGTGCAGAATGGAAAAGTTATTGCACGGGGATGCAACTTAGTAGAAGAGTTACGGGACTCCACTGCTCATGCAGAGATGATTTGTATCCGA GAAGCTTCAGGTCTTCTTCGAACATGGAGACTATCAGACACTACACTATACGTCACGCTTGAGCCCTGTCCTATGTGTGCCGGAGCCATTCTTCAGGCAA GAATAGATACTGTTGTGTGGGGAGCTCCCAATAAGCTTCTTGGAGCTGATGGTAGCTGGATTAGGCTTTTCCCTGATGGAGGAGAAAGTTCATCTGAACC AAGAAATATACCACCTGCCCCAGTTCATCCATTCCATCCAAAGATAAAGATAAGAAGAGGAGTCTTGGCCTCGGAATGCGCAGACGCAATGCAGCAATTC TTTCAGCTGAGAAGGAAAAAGAAGAAAGAAGAATCGTCAAATGACCAATCTTCCCTTCCTATTACTCACCACCACCCCTCCAAGTTTCTTAACAAGATTC ATGACATCTTTCATGTAATGTTTTGTTTGTAAAATAAAATTACAGACACACATTTTCCTCATGTTTTAAATGAGCAACTGAATGAAACTTTCAAACATGA TGTATGGTCTTAGTGAAAGGCACAATGTTCAATTTCTAACGTTATATTCATTCAGCAAAGTTGTACTGAACAATAACTTAGACGTTTCTATACCAACCAT TGTTGTCAACTTTAACTTCACGTTACAGCTTTGAAAGTTTCTTTAGTAGGTATTGTAGGAATAACATTATTTGTACTATTATCTATATCAATTCTCTATG TCACTCCTTTTATTTTATTTTTACTTTGTTACAGGTGAAACCAAAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_161628; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_337135
| Blastp | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.71% of identity |
|---|---|
| Blastx | tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.02% of identity |
| Eggnog | deaminase(COG0590) |
| Kegg | Link to kegg annotations (AT1G68720) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460745.1) |
| Pfam | Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |