Ll_transcript_337140

• Id Trinity: TRINITY_DN48506_c3_g2_i9
• Name Transcript: Ll_transcript_337140
• Sequence: CAAAAAAAAAGTTGTCATAAATGGGCCATTTTTCTTTTTTTTCCAAGGTTCAAAGATTCTGTTCTTTCTCACAACTGAACTATGTGCTATTTATCTGCAT GCTTTGCTTGATGTGAAGTGAAGAACAAATCAAATCTAATGAGCTGAACCCATTTCCCACACTCTCTTCCATTTTCCACTTCTCATTTTATTTCTCTCAT TCAACCAAGTCCCTTCACAGAAAGTTTGAAACTCCAAAACCCTTTTATGCAAACCAAATCTTAAGTGCCCAGATAGATTCACCACCACCCTTTTCTAAAG CCAAGTTCTTTCTCAGCTCAGTTGTAATTAAAATAACACACTCTCTCATCAAGACACTCTATCCCACCCTTGGTGGGAAGACGCGTGCAACTATGTACAA CACAAATTTCAGCTCAACGATATATGCGGTTAGGTGTAAAGAGACATTTACTTTATCTTCCAATGGCTACACAAATTTCTCGTATGAAAGATTTGATAGA AACCCATCACATTGTTCATCATGTTGTGGTTGTTGTGATTGCTGTTCATTCTCCACTTACAAAGTGCCTGTAAAGTCCAGTCTTCTGAATGGGCTGAAGC AATCTACTCTCCTTCAACTTTCAGCTTCTAGAAGGTTGATTTTGGGTGGTGGAGACCTGTACTTTTCCCGACTACCATCTTTTGATCTCCATAGAGGTTG TTCTGAGCTTAACTATTCTGTTCACGAGATAACTGTTTGCAATAGAAGTACAAGGAGAACAAAGGGAAGATGTTTGTGTACGGCTCCACGAAAAGGAAGG GAAATATGCCACACAATTGATTCTGATGATGTTGAATCAGTTCTCAGCTTATTGAGTGAAGAAGCAGATAAGGATTCTAGCAGTATCAAATTGAAGAGCG TGTCTTCACCCAAAATAATGGAAGCAGAGAAGAAAAGAAAAAATGTGATCAAAGAGAGAAATTTGAGTTTAAGTAAGAAAGTAGAAGCAAAGAAGAAAGG AAATTTGAAGCTACATGAGACATCCACTATAGACTTGAGAAGCGAGAATGAAAAACCCTGCAAAGAAAGGGAAACCTTCAATAAAAGTGAGAACCATAGG AAGCGAAGAGATGTTTCTAGTTGCTCATCTTATTACTCACTTTCATCAGGAGATCTTGCAAGTGACCTGGAAGTTCAATATAAGCATGATTTGGAAGAAT TATCAGTAGTATATGAGAAAGATTGTGCAAATCACGAGGGACAAGTAAAGGATGAACTGAACAGGCAAAGAAATTACTCACAGAAGCTGCATTATGTTCC AAATCAGGAAAGGACTGCATTTAGTGCTAATAATATTGATTGGAACCTAAGGAAGAAGTCTGAAAAGAAACCGACTGACATGACTATGCAAGAAACATTA TCCACAAAAGAACACAAAGATAAGCATTCAAGAGCATTTCGAACTCATGAATCTAGTTATGGAAATACATCTATTTCACGCAAGCAAGTCGAATGTGAGG AAGATAATTTATCTTTTGTCAAGGATTTGGATAAGAAAATGGAAAAGGCATATATTAAAGCAAGGGGGAAAAGAAATCACCAATCTACAGATACACAAGA GTCTGGTTATGATGAAGTTGAAACAACTTTGGCTTCAAAGAAGACATTCAGTGGCAGGGAAGGGAACCATGAGATATCAGAAACATTGTTACGTGAAAGA AGTGATGAACATAAAAAGTTTGTTGGATCTAATTCTACCACAGGAAAGGAAACTTCAGAATCAAAGAGGACATTCAGTGGCAGGGAAGAGAATCCTGAGA TATCTGAAACACTTTTACACGAAACATGCGAGGAACGTAAAAAAATTGTTGGTACTACTTCTACCATTGGAAATAATGTAATAAATAGGAATTCCCAGAA ATATATGGGAAAAACAAAAGTTGAGGACACTGATAGAAACTTAAATACTCGAATGAAGAATTTGGCAGAGGAAAAAGTTACAATTTTGAGTTCTGTTCAG GGAGTAAAGGAGCAACAACACCAAAAAGGAGAAAAGATCGTTGCACAGGCTAAAGAGAGCAGAAAGCCTCAGCGATTTTCTGAAGTATCACAAGTTCATG AGAGTAATGTAGACGATACATCCATTGTGACATCCAGAACTAGAATAAATGACTGGGGAGGGAATTCAAACTCAAGCACAGCTGCCAGGGGTACATGGCA CCAAATAGATGATAGGACAAATCAGAGTATTCAACACGGGAAAGGGTTTGAACATGTCAGCACCTTATCAGAAGGGTATGCCAGTGATGAAAAGCAAGTT TCCAGTTCTCAAAGAATTTCTGGGAAGGTGAGGTTCATCCCAAAAAGTAAATCAATGTCAGTTGTTAAAACCAGAGAGAGCTATTGCCAAACTGATGAAA GGATTACAAATTTTGACTTGTACAGTGAGGGCCAAAGACCAATGATCCTAGCAGTTTCTGATGAAACTGTCTCAAGAGAGGAAGCCAACTTCCATGGATC GTTGAATTTGGTTTCCGAGGCTGGAAAACGTGTTAGATTGGCATCAGGGGACGAACAGAGTTCAGAAGGAATGCTGACCCCTTCCTCATCCAGATTGATG GGTCGAAGCTCAGTACATGTTGAACTCAATGCTGAAATTGAAAATCCTGGGATCATCATTGAAAGTTCAGATAGTGGCTCATCTGCTATGTATGACAGTG CCAGAAGAAATCCCATTTTTCTTTCTGGATCATACTCTACAGATGGAATTCATCAGGCCTATAGTGAACCTTCTAACATCATAGATCTGGAAGGTGGTGC CCTTGGTTCAGCTGATCGTTTAGAGAAATCATCCAAACAGTTTGTTGATGAGTTTGTTGAGAGAGTCCGGCATGAAGTCACCACTTCAGAAACACGAGAG CCAGATGTTACTGGAAAAAGGTTGACCATTGAAGATGAAGGAAATCAGATCTTTAGTTCAAGGCAAGAAGGCACTCAAAATGAGTCACAGTTGAAGGAGC GTGGTTCTAGCCATTCCTCTGGGTTTCCTGGGACCAAAGGACCTTCTGATGAAATGTGGGATGTAAATGAACCATATGTTGAGCAAAGTCTTATAGCTGA AGAACCAGAGATCGGCAAGGAAACTGAGAAAACAATTCTCAGTAGAACTGGGAGGTCCATGTGGAGTATGATTGCAGATGTTGTTCGATTACGTTGGGGC TCACGTACTGGTTCCTCCACTTCAGTTGGAAGATCAGGTGAGAGAAACTCGCCAAACAAGTCTGATACTGAGACATGGTTTTCAGGGCAGGAGCATGAGG AAACTAGTAAGAGTAATGTAATAAAGGAAACAAGTGTACTACCACAGACCATGACTTCATCAAAGCCAATTACATCTTATACCCAAAGTGACGGAGACGT GTCTGACACTAAAAGACTGAAGGACAATGGAAAAAATCTTGAAGTTAGATCATCTTCTCCAAATGCATTGGAAAGTGGATCAACATCATTAGGTGCCTCA TATGCTTCTGGTGAGGAACATGCTAACTGGAGTGAAGATGGAAAAGATTTGAAAGTCAGTACTTCAGACATAAAAAATGTGGAATTCCCAATTCCGTTGC CTGCCAGAGGGCCTCCTTTTGTTGGGAAAATTGTAAATGTTGGTGGATCTGACATATCTGGAAGTGAGCCGATTGTGCCAATCAAAGAACCTGTTGCTGC AGTGCAATTTGAATCGTCTGGCTTAGGGGAAAAGGATGGAGAGTTGAAGCAAAGGAAGTTTCAACGGAACACTCAAGTATTGAGAGATAGGTTTGATGAT TGGGAAGAAGCCTACAATGCTGAATTTGAGCAGCGGAGAGTGGATGAAATGTTCATGAAGGAGGCACTTTCGGAAGCTATGAAAGCTGCTGATACATGGG AGGTCCCTGTTGGTGCAGTTCTTGTGCAGAATGGAAAAGTTATTGCACGGGGATGCAACTTAGTAGAAGAGTTACGGGACTCCACTGCTCATGCAGAGAT GATTTGTATCCGAGAAGCTTCAGGTCTTCTTCGAACATGGAGACTATCAGACACTACACTATACGTCACGCTTGAGCCCTGTCCTATGTGTGCCGGAGCC ATTCTTCAGGCAAGAATAGATACTGTTGTGTGGGGAGCTCCCAATAAGCTTCTTGGAGCTGATGGTAGCTGGATTAGGCTTTTCCCTGATGGAGGAGAAA GTTCATCTGAACCAAGAAATATACCACCTGCCCCAGTTCATCCATTCCATCCAAAGATAAAGATAAGAAGAGGAGTCTTGGCCTCGGAATGCGCAGACGC AATGCAGCAATTCTTTCAGCTGAGAAGGAAAAAGAAGAAAGAAGAATCGTCAAATGACCAATCTTCCCTTCCTATTACTCACCACCACCCCTCCAAGTTT CTTAACAAGATTCATGACATCTTTCATGTAATGTTTTGTTTGTAAAATAAAATTACAGACACACATTTTCCTCATGTTTTAAATGAGCAACTGAATGAAA CTTTCAAACATGATGTATGGTCTTAGTGAAAGGCACAATGTTCAATTTCTAACGTTATATTCATTCAGCAAAGTTGTACTGAACAATAACTTAGACGTTT CTATACCAACCATTGTTGTCAACTTTAACTTCACGTTACAGCTTTGAAAGTTTCTTTAGTAGGTATTGTAGGAATAACATTATTTGTACTATTATCTATA TCAATTCTCTATGTCACTCCTTTTATTTTATTTTTACTTTGTTACAGGTGAAACCAAAC
• Tissue: pods
• Gene name: LI_gene_161628;
• Additional information: details;

Expression of Ll_transcript_337140

FPKM

• PAB: 0.3
• PNAB: 1
• PS1: 1.6
• PS2: 1.8
• PS3: 1.7
• PW1: 0.3
• PW2: 0.5
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_337140

• Blastp: tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.71% of identity
• Blastx: tRNA(adenine(34)) deaminase, chloroplastic from Arabidopsis with 35.02% of identity
• Eggnog: deaminase(COG0590)
• Kegg: Link to kegg annotations (AT1G68720)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460745.1)
• Pfam: Cytidine and deoxycytidylate deaminase zinc-binding region (PF00383.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;