Ll_transcript_337852

• Id Trinity: TRINITY_DN48525_c0_g1_i3
• Name Transcript: Ll_transcript_337852
• Sequence: CGAATGTCCAGCCTCACTCGTATATATATATATAAAGATGATTGTAATTAGGGTTCTTCTCTGAAACAAGGTTTTGCATCGCGAATTTGTAGCAGCTATG GCTCCCAAAAGAGGTGTAAAGGCTCCAGTTGCAGCTGCTAAGAAGAAGCCTGTGGCTGAGAAAACGAACCCGCTATTTGAGAAGCGTCCGAAGCAATTCG GCATCGGAGGAGCATTGCCTCCGAAGAGGGATTTGACTCGATTCGTGAAGTGGCCAAAGACTGTTCAAATTCAGAGAAAGAAGAGAATCCTCAAGCAGAG GTTGAAGGTTCCACCTGCTTTGAATCAGTTCACTAAGACTCTTGACAAAAACCTAGCAACCAGCCTGTTCAAGATACTTCTTAAGTACAGGCCTGAGGAC AAGGCAGAGAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCTGAAGCTGATGGCAAAACCGTTGAAGCTAAGAAGCCTATTGTTGTCAAGTATGGTCTCA ACCATGTTACTTACCTTATTGAGCAGAACAAAGCACAACTTGTCGTGATTGCTCATGATGTGGATCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTG CAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGCAAGGCTCGCTTAGGAACGGTTGTCCATAAGAAAACTGCTTCTGTTTTATGCTTGACTACTGTT AAGAATGAAGACAAATTAGAGTTCAGCAGAGTCCTTGAGGCTATTAAGGTGGGTTTAAATTTAATATATTCTGTTAGATTTTTTGCGGTTTAATGTTCTA GTCTAAAGAGGCCGAGACTCACACGACAATATGGCTGTTTGACTTGTGATTTGGAGGTCACACCTTCAAATTCTCGAAACATCATTTTCCCTTGTGAGGT ATAATATATAACCCTTTTTCATACCCAAATGTTCTAGTCTAAACCCGTTTTTTTGGTTTCCTATTTTCTTTTCAGGCCAATTTCAATGACAAGTATGACG AGTACAGGAAGAAGTGGGGTGGTGGTATCATGGGCTCCAAATCCCAAGCAAAGACCAAGGCTAAAGAAAGGCTTATTGCCAAGGAAGCAGCGCAACGGTT GAACTAGAAACTTCTGATATTTTAGCTGCTTTTAGGATTGCTTTTTTGTGTTTGTATGCTTGTTTTTTTAATTATATCCTTTGTTAGTTTTCAAAGATGT TTTGTTGGATTGGACCACAAAAACTTTATATTAAATGAACCCCTTTAATTTCATTGAAATCTCCTTCAAACTCCCTTTAGTTTTTTGAATAGAATAACTC GATCTTTTCCCTACTATAGTTCCCATTGAAGAAATCTTAAACCAGCGAAGCTGGACTAATTCTTCAACCTGTTTCAGATGCAATCTTAAACCAGCGAAGC TGGACTAATTCTTCAACCTGTTTCAGATGCATCCACAATAGTAGGAGCCATGGCTAAAGCTCTCACACCACAAGAATGCGAAACCTTCATCGATGAATTC CAATCCCATTCCCACAAATTCAATTCTCCTTCTTCCCTCATCGATCAATTTCTCTCTTCTCTTCTCCGCAGAGACTTCCCTCTCTCTCTCAAACTCCAAC TCCTCATCTTCCTCGATGAATTCTCCGATCCTTTATTCTCTCCACCGCAACTTCCCTCTCTCATCGACGCTCTCCGATCCCTCCTCAATGCCCCAAACGA CGCCGTTTTCATCACTCCCACTCTCAAAGACCACTTCATGGTTTCCGTCACTTCAATTCTCATCTGCGTTTCACAAAATCACAATCTCCAACCATCGCTA CTTCACTCTCTAATAGTCACTTTGGTGGAACTGTTGTTAACGGTTATTAACCGTCCGAATTTCGGGTCGGATCGACAAACCCGATCCATAGCATGTGAGT GTCTCAGGGAATTGGAGCGGTTTGAACCGGGTTTATTATCCGATGTGGTTGGTCATTTGTGGAGTCTCTGCCAGAACGAGCGAACCCACGCTTATCAGGG TTACTTTCTTCTCTTCACCACTGTTATTCATAATATTGTAGAGAATAATCTCAACGTTTCGATTCTCAATACCTCTGTTCCTATGGTTCCTTTCAATATG CCGCAGTGTTTGTTGGATTCGGGTTCGAGTTTGAAAGATGTTTCTGTTTTGAATTATAAAGAGTTGAGGAGGGCGTTGTCATTTTTACTTGAATGTCCAC AAGTTTTAACTCCTTGTGGGATGATGGAGTTTATGAATTTGATAATACCTATTGCTGTGGCATTGGAATTGCAACCATCCATGCTCAAGGTGCAGTTTTT TGGAATGATTTATTCCTATGACCCAATCCTATGCCATGTTGTTTTGATCATGTATCTGCGTTTCTTAGATGCTTTGGAGGGTCAAGAGGGGGATGTTTCG GGCCGGCTTTTGTTAATCACGAAAGAGTCGCAGCACCATTTGGTGTTTCGTTTGCTTGCTGTTCACTGGTTGTTGGGTTTTAATCAATTGATTTTTGGGA AACAAGTTGACAAGACCAAGTCCATTGTTGAAGCGCGCTCAAGGTTTTATCCGTCTTTGTTTGATCCACTTGCTTTGAAAGCCTTGAAACTCGATCTTCT TGCTTTTTGTGCGGTGTGTGTTGATGTCTTGAGACTGAAATGTGATTCCCGCGAGGAGGATGAGTTAGTTGATGTGGTGAAGTTGTTTGAAGATGGTCTT GTTTGTGTGTCATCTTTCAAATGGTTGCCTCCCGGGAGCACAGAAATTGCTGTTGCATTCCGCACCTTCCATAAGTTTCTCATTGGTGCATCATCTCATT CTGACAATGATCCTTCTACCACGAGAAACCTATTGGACTCCATGATATTTCGTACTTTGCAGGGAATGCTTGTGAACGTGATGTTGGAGAGTCGGACCCT GGTTCCTGTTGTTGTTACTTTCATTGACCGTTTACTCTCATGTCAAAAGCATTTATGGCTGGAATTGCTGAAAACCAGACAATACCCCCACATGGGCTGT TAGAGCTGCTCACAAACTTCATGGCATTTCTTGTGGAGAAACATGGCCCAGATACTGGAATGAAATCTTGGTCTCAGGGAAGTAGAGCTCTTGGAATATG TCGAACTATGATGATGCACCACCATAGTTCTAGATTGTTCCTTAGACTTTCTCGTCTACTTGCTTTTACTTGCCTCTGTTTTCCTGATGTGGAAGTTCGT GATAGCTCAAGGATCTATTTACGTATGCTGGTCTGCATTCCAGGGAAGAAGCTTAGAGACATCCTAAGTCTTGGGGACTCGATCCTTGGGATTTCTCCAT CTTCAAACCCGAGCTCTTTTTT
• Tissue: pods
• Gene name: LI_gene_161796;
• Additional information: details;

Expression of Ll_transcript_337852

FPKM

• PAB: 0.8
• PNAB: 1.5
• PS1: 0.8
• PS2: 1.4
• PS3: 1.2
• PW1: 0.7
• PW2: 1
• PW3: 0.9

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_337852

• Blastp: 60S ribosomal protein L7a-2 from Oryza sativa with 86.43% of identity
• Blastx: 60S ribosomal protein L7a-2 from Oryza sativa with 89.95% of identity
• Eggnog: -
• Kegg: Link to kegg annotations (4345279)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019454257.1)
• Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (PF01248.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;