| Id Trinity | TRINITY_DN48531_c1_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_338957 |
| Sequence | CCGGTTTCTCCCCTGAGACTGAGAGGACTCATTCTCAAATCTCAACCTTGTTGGTATAGGTCAGAAAATTTGGTGTTATTGAATAGTTGACGTAGGCAGC GAAACACGGTTCTCTATCTGTGTGTGTGTATCTGTTTAGTTGAGAGTGCAATTGATATGGATCATAATCATAATCATAATCATAATCATAATCATCCTTA TCATGCTCAATGGCGCTCTATTCGACCATTCCAAGATTCATGTCCTACTTGCTCTTTCTCTCATTTCCCTTTCTGTCCTCTTCCACAACAACCACCACCT CCTCCACCACCGCCCTATTATCACCACCATCCACGGCTCCCTCCTCACCCCTACCCCGTTACTAACCCTAATTACCCTAACCTCGGTGGCGGCGACGGAG GTAGAAACTCGAATAAGAGACTCCGCATCGAGGAGGAGGAGGAGGAGGAGAATGAGCGAAGAAGATTGAAGCTGATTCGAGATCACGGTGTCGCTCTTCC TCATTTGAATTTGAATTCCTCTTATCATCACTTACCTTCACGTTCTTCTAATGGATTTCATTCTATTCTCGATCCTTCTTCTTCATTCTTCATCGCTCCT CCTCCTCTTCCATCTCAACCACAACCTCCTCCTCCTCCTCCGCCACCTCCTCCGTCTCATTCTTCTCACTTCAATCCTACTTCCTCTCCTCTCCCTCCTC CTCCTCCTCCTCCGTCATCATCATATTCACAATCTCGGGCTTATTTTCACGCTAATCCTTCTCCACCTTCTCAATTTCACACTCCAAACCAGCATTTTCA GCAACAACACTCCAAGCATCACTACTCGCCAGATGCTCCTCAATCCTTTTCACTCAACAAGCTGCTTCCTCAGAAACCTAAATTCATGGATGCTTCACAA CTATTTCGCCATCCGCATCGCACTTCCCGTCCCGATCATATTGTTATTATCCTTCGTGGTCTTCCAGGTAGCGGTAAGAGTTACTTAGCAAAGATGTTGC GTGATATTGAGGTTGAAAATGGTGTTGATGCTCCACGTATTCATTCTTTGGATGATTATTTCATGACCGAGGTTGAAAAGGTTGACGAAAATGATGCATC AAAATCTTCAAAGTCAGGCAGAAACAAGAAGCCTGCAACAAAGAAGGTCATGGAGTATTGTTATGAACCTGAAATGGAGGAGGCGTATCGGTCAAGCATG TTAAAATCATTCAAGAAAACTGTTGAGGAGGGAGTTTTCACCTTCATTATTGGTATGCATCACAAAAGCATGACAGCTAAATTCTCTTAGAACATATGAT TTACAATTAGGGTATTAACCTAGTGTGAGGTCATAGTTTTGCTCTGGATGGGAAATTTTGATTTCTGTCATGAGTTCATAGTGATTTCAGTGACATTGCT TATGTTTATTTCTTGTTAATAGCATTGCACTGAACACTTAGTCATATACTTAATCTTCTCTGATAGATGTGTTTATGTGAAATTACCTAAATCATTGTTC ATTCAGGAAATCAAAAGAAAAAGAAATATTTTACTTAGGTCAATTGAAAAAGCTTAATCATAGAAATCAGGGGAATTGGTTGAGGGCTCTATGATGGCCT GTTATAAAATTTAATTAAAGTTCAATGATGTAGTTTCGTTTTAGATTAAGTGGTGATGCAGTGCCCATGCACTGCCTATTTGTTAACTAACTACAGATGC AGTTTTGTTCGGCAATTGACCCTTTTCTTGGTGGTATTTGTGCCTCGTCTTAGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAATTTTGGGCA ACTGCAAAGGTATACCCTTAATTCTTTCTTTCTCGCAACCTCTGCCATGTGTGGTCAAGACGACTCACAATATCTTTGTACTAGTGTCTCCATCTTCCCT CAGAAATAGGTGCAGCTATAGGTTTCAAGTGTCTTATGCTTACCTAGTTTAAAATCATGATATTTTTATGGAAAGATAGTGAGCAAAAGATGGAGGGGAA GGGATAATTTAGCCTTGCTATTAGCTATTGCAAATAACTAAGCTGAACGATTGGTAGTCCTCTATATTTTCTTATGCTTCCTATTTGTTTGTCTTGTTTA ATTTGAGACATTGTATAACCCATGTTATGCACAATATCAAATTAAAAAAGGGACGGCCTTTGCACGAGTCTCCCACTTAGTGGGGTCTGTGAATCGTAAA TGTATAGCCTCCCTCACAAGTGAAGAGGCTATTTCCAGATGCATAATATCGAATTGTGTACTTTAAATGGGAGGTTATGGCTACTTCATGTACCATTTGC TTTGTGATATGAGCTGTTGCATGCATGAATACCAATGTACTCCACTGTTATAATGATTCTGTGAATTAAGGAGCACATTCATGAGATCTGTTTGTTAAAT ATATCTCCTTTGGTCATCACTTTTCATCTTAATTTCAGAGGTCGGGGTATGAAGTTTACATTTTAGAAGCTACTTACAAAGATCCTGCGGTATGTCTACT TGTTCTTTCCACTGAATACATTGAATGCCAAATTGCTTTTATTTTAGCCTCAGAACTCACTGATGGTCAGTATTGTTCCTTGCTTTCAAAAGTGTTTGTC TTTCTTAATTGGTAATCTAATACATTCTATTGCATGTTAATAATTGTTGGGTTATTTAATGATGGTAGAGAACTTCCTCTCTCTTTCCTGTTGTCTTTCA GAATATTGATTAGGTATTTGGATATTGGGTATTGGGTTTTAAGTTTTTGGTTGTTTTGGTGCTGATTGACGATTGAGTCCTCATATCTGAGCAAATTTCT TTTAATGTTCCGTGGGTTTGATATTTTACTTTAATCAGGGTTGTGCGGCCAGGAATGTCCATGGGTTTACACAAGAAGACATAGAAAAGATGGCTGGGCA ATGGGAAGAAGCTCCATCCTTGTATTTGCAGCTTGATGCGAAGTCATTATTTCATGGAGATGATTTAAAGGAAAGCAGAATCCAGGAGGTAGACATGGAT ATGGAAGATGATCTTGGTGACGCTTTAACTGCAGTCGAAGGAAGAGAAGCTGAGAAAGTTATTTACCCTCCTATCAGGGTTGATGCAAGTAGTATGCTTT AACCTATTTCTCTTTCTATGGCTATGTTTTACCAATGCTGTTAAATTTTATTTTTTCCGGATGCATCTGATAACTGATGCTTACTTTCTTCACTTTGCAC TCCTTACTGTTGGTATGGGATCTAAGGAGCTTGAATATGCAAATCATCTGAATCTGTGTTCCATATTTCTGCGCAATATAATTAATGTCAACAATGATGT AGTTTGATATGTTTTTCTCTATATAGTATTGGACAAGGCCAGGTGAGCATAGGGTTATAAGGTGCTTTAACCTACTTAAAAAAATGTCTATCTTGACATC TCTTTTTTACTTCTCATATTAAACCTTTTCTCCCCCTTGATTGGATCTGAATACTCGAGCATGGCAAAGGCATTATAATTTTGTGAGTAGTGACGTAGTG TACAATTGACGTGATATAGATCTCCAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_161837; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_338957
| Blastp | YLP motif-containing protein 1 from Rattus with 51.54% of identity |
|---|---|
| Blastx | YLP motif-containing protein 1 from Mus with 53.54% of identity |
| Eggnog | YLP motif containing 1(ENOG410YIR5) |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019451155.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |