| Id Trinity | TRINITY_DN48541_c6_g2_i11 |
|---|---|
| Name Transcript | Ll_transcript_336531 |
| Sequence | TTGACAGAAAAGGTGAGACCTATAATTAAACATAATTCCTCTACTTTTTGTGATTGTGCTCCACCTGGTAATATTGTTATGCACAAAAATTCCTCTATCT GTATGCAGGGAGATTTGATTTCAGGTGTAGAGATCTTGCCTCCAACAAATAATGGAGTTTGTATCCAACTTGATGATAATGCTACTAATTTTTCTACACC GGTTGAACCTATAGAAGCAGAAACAAGGTCTAAATTTTCTCTGAAGGAGAGGGAGACTATCATTCAAAAAAAGGGAGACAACAAAAATGTATTAAAAAGG TAAAACAAAAATAAGCTAGGACTGATTGGGATAATTTTTGTGTTGATCTTACAAATGTTCCTTTAATCTCTAATATGGATCAGACTTCATTGTCCTATGT GCATGAGGCTGTTGGCCAACCGGTGTCAAAGTTTTCCAATCCGGCTCTTTCTGCTGTTGTCCCCTTGGTCGTGCAACATGGTCCTTTAGTTGCTGCTCCG AGTGCTGCGAGTGTCAGTTGTGTGGCAGCCTTAGAGGTGTGGAAGTTAGGCGAAAAAATTGGTTTGTTAGGGAATGATAATGAAGATGAAATTATTCAGA AATTGATTGCTGTGGAGGATAGAGACAATGCGAAATTCGAAGATGCTAGAAGGAGGTCAAATGGTTTTGATGATATTAATCTCCATTAATATTCGTGGTC TTGGAGGGCGGTTGAAGAAGAAGGAGATTCGCGACCTTATTCGTAAACATAAGCCTGATATGATTTGTATTCATGAAACTAAAATCCCTGATGTAGACTA CTCTTTATGTTTGTCTCTGTGGGGCAGCGATAATTTTGGGTGGGCGTGCTTACCTGTAGTGGGTGCCTCGAGTGGTATTTTGACTCTCTGGAATAAATCC CTTTTTGTTTCCTACACAGTGAGGTGCAGAACTAATTTTGTGACGGTCAACAGGAAATGGACTCTTCATGATGAGCCTGCTAATGTTATGAAAGTTTATT GTCCTTATGACCTGGCTGGTAAGCGATTTTTCTGGGTGGAGGCTATTTTAGATTATCGTGGTCATGCTGATGAGATGTGGTGTGTGGTAGGAGATTTCAA CTCTGTACTTAATCAGGAAGAAAGGGTTGGCACTAGTTCTCGGGCGAATAATTCAGAGAGTGGTGAATTTGCTCAATGTGTGGATGATATGGAATTATTC GATCTTCCTCTTGCAGGTTCGAAATTCACTTGGTTCTTATCAAATGGTTTGGCTATGAGAAGGTTAGATCGTTTTCTTGTGAATAATAACTGGTTAATTA ATTGGGGACAGATGGTTCAACAATGTCTTAATAGAACTTTTTCTGATCATTGCCTTATCCTGCTTAAAAGTGACGTGCCTGATTGGGGTCCGACTCCTTT TAGAACAAATAACTGCTGGTTTTCTGATGATGTCTTTTATCAGTTTGTGGAAGATGAGTGGAAGTCTTTGAGTGTGGTTGGAAGGGGTTCTTTTGTTGTT AAAGAGAAGTTGAAGATTCTTAAGGGGTTTTTGAAGCGGTGGAATAGGGAGCATTTTGGTGTGCTGGATAGAAAAATTTATGATCAAGTGGCTATTATCA ACCTCATTGATGGTAAAGGCAGTTCTGGTGCTCTTTCTAATGAATATATCTCTACTAGGAATATGGCCACTGCTTATCTTTGGAGGTTCGCGAGTCAAAA TGGTAATTTATTACTTCAGAAATCGAGACAGAGATGGCTTCAGGATGGGGATTCAGATTCTAAATTCTTCCATGCAACAATTAACAGGAGGAGAAAGTCT AATGCTTTACTTGGATCTTTTCTCTGAGTCTAACTGGAATAGACCGACTCTTGATGGTATTGATTTCAAGAGTATCTCTAATGCTGATAATAGTTTCCTC ACGTTGAAGTTTGAGGAGGAGGATATCAGAGAAGCTGTTTGGAGTTGCGATGGCGATAAAAGTCCATGGCATGATGGGTATAATTTCTGTTTTATTAAAA AGTTATGGAATTGCGTGAAATCAAATATTCTTGCTTTGGTGGATGATTTCTACACTTATGGTAATCTTGTTAGAGGTTGCAATGCATCTTTTATTGTGCT GATTCCGAAGAACGACTGTCCACAAGGCCTTGATGAGTATAGGCCGATATCTCTTATTGGTTGTCTTCGGAAAATTATTTCTAAACTTCTTGCTGGCAGA ATAAAGAAGGTTATCCACACGGTCATTTCTGATTGTCAGATTGCCTTCATTAAGGGTCGTTACATTATGGATGGAATTGTAATTGCTAACGAGATCATTG ATCAGGCAAGGAAAAAGAAGGATCAGAACTGTTTTATTTTTAAGGTGGATTTTGAAAAGGCGTACGATTCGATGGACTGGAGTTTTCTGCTCTACATGAT GGAAAGAATGGGTTTCAGGGCCACTTGGAGAAATTATTTCATACCTTGATGAGTATAGGCCGATATCTCTTATTGGTTGTCTTCGGAAAATTATTTCTAA ACTTCTTGCTGGCAGAATAAAGAAGGTTATCCATACGGCCATTTCTGATTGTCAGACTGCCTTCATTAAGGGTCGTTACA BLAST |
| Tissue | pods |
| Gene name | LI_gene_161925; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_336531
| Blastp | LINE-1 reverse transcriptase homolog from Nycticebus with 24.54% of identity |
|---|---|
| Blastx | LINE-1 retrotransposable element ORF2 protein from Mus with 26.64% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019465331.1) |
| Pfam | Endonuclease/Exonuclease/phosphatase family (PF03372.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |