| Id Trinity | TRINITY_DN48565_c1_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_338343 |
| Sequence | TGTGGCCAATGGTAATATTAGGTTTAGTGAACCTGCTATCCTTGCTATGTGTAGAATGTGTGCTATTAATCTCTTTAGAGTTTTCTCGCCAAATTATCGG TTGAATCGCGGTGGTGGTGGTGGTGGTGGTGAGAATGATGACTATCCAACTTTTGATCCTGCTTGGCCGCATTTGCAGCTTGTGTATGAATTGTTTCTTA AATTTGTTAGCTCTTCTTGTCTCGACGCCAAGGTGGCAAAGAAATACATTGATCATTGGTTTATTTCGAGGTTGCTTGAGTTGTTTGATTCGGAGGATCC TAGGGAAAGGGACTGTTTGAAGACAATTCTGCATCGGGTTTATGAGAAGTTCATGGTGCATAGACCCTTTATTCGTAAATCTATCAACAATATATTTTAT AGGTTTGTGTTTGAGACTGAGAAACACAATGGGGTTGCGGAGTTGTTGGAGATTTTCGGAAGCATAATAAGTGGTTTTGCTTTGCCCTTAAAAGACGAAC ACAGAATGTTCTTGTGGAGGGTTTTAATCCCATTGCACAAGCCCAAATCTATGGCTGTCTACTCCCAGCAATTGTCGTACTGTGTTACACAGTTTATTGA GAAGGAGCCTAAGTTGGCGAGCACTGTGATAAGGGGTCTGTTGAAATATTGGCCAATAACTAATAGTCAGAAAGAGGTCATGTTCCTGGGTGAACTTGAA GAAATTTTGGATGCAATTAACATGGTAGAGTTCCAGATGGTCATGGTCCCATTGTTTTGGCGGATTGGATACTGCATTAACAGCTTGCACTTTCAGGTTT GTAGCAATACATTATTCAGCAAAGGTCCCCTTATAGTCAGTTAGTCACTATGGAGGAATTCAATCATCTGTGATTCTGAGATGTGACTCGTTCATCTGTC TCAGTTTCTTTGGGTTGGTAAGAGCGGTCCATCCACACCGGGGGCACTGAAAGTGAAGGCATTCCCCTCTTAAGTCTTAACATCCTGGCTTTTAAGAGTG GCTTCTCCTCGACATCAACTGGTATTGGAGCTTCGGGCGTCTCTCCCCAATGTAGATGGATGCTCTTTCCAACCCAATGAGATTGATGGAGGAGCATGAA TCCTGTACAGGACGGTTTTGAGACAGGACACTGATTTAAGTGGAGGCTTTCCTCTGCATCATTGAGACTAGTGTTGCTTTTCTTCAAGTTCAAAGTCAAC GGATCTTGCAACTTTTGTTGGGAGATTCATCTGTTTAGGTGTTTCATTCCGGATTGTACTAATTTTGGGTCACTAGTCACTGATACCATGTGAAAGTACT TTATCTATGATTTCTTGTTTCTTGAGAGCTCTCGGTATTTTCCTGAAGCGTATTTCCAAAATCCTTGAACCCTCAGCTTCCTTATTTGAATTAATGATTT TCTAATTGGTGCAATTTTTCTCTATCTCTATTCATTTGAGAATCCGTTGTTGATTATAACAGGTAGCTGAAAGAGCTCTTTTCTTATGGAACAACGACCA CATTGTTAATTTGATTGATCACAATCGTCAGGTGATCCTGCCGATCATATTTCCAGCTTTAGATAGGAATTCTCAAAGCCACTGGAATCAAGCAGTGCTC AACTTAACTCATAATATAAGAAAGATGTTCATGGAGATGGATGCGAATTTATACCTGTCATGTCATTCTCACTTTAAGGAAGAAGAAGCAATGTCAAGCA CGGCAAATGAGAAGCAAAAGGAAGCGTGGAAACAACTAGAGCGTGTAGCCAGTCTCGGGCCTGTAATCGGAAATACAGCAGTTTTAGTCTCTCCAATTTG ATAGCCTGTTATGCATGAATCCACACTACATTACTACATCCCCAGTCTATATCTCTATCCTCCTGTTCTAGTAGAAAACCTCAAGAAATGTCGTAATGGC TGTTATTGGCAGCGACTTTTTTCCGGGTCCCTTAAGGTTTTGATGGTTCTTGTAGCTCAAGATGTTGTAACTTGTAACATGGTTTTGATTACCAATGCAT AGGAACAACTCTCATTCTGAGAAGTAATGAGAAAGACCATGAAGTGGATCAAATGATTATTTGTATAAGCTCATTTCCAAAATCTTCTGTGTTATGACTA AGTATGTTTTTTCCTGCAAAAGTAGTTGAAAGCTTATGTAGCTTAAAGTTTATGGTTATATTGGTAGCTTATTGAATAAGCTAGTTAACAAAGTTGTTAA TTATTTTATGAGAACTACCTAAAAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_162140; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_338343
| Blastp | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform from Arabidopsis with 75.1% of identity |
|---|---|
| Blastx | Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' kappa isoform from Arabidopsis with 71.13% of identity |
| Eggnog | Protein phosphatase 2, regulatory subunit B(ENOG410XQJW) |
| Kegg | Link to kegg annotations (AT5G25510) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415466.1) |
| Pfam | Protein phosphatase 2A regulatory B subunit (B56 family) (PF01603.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |