| Id Trinity | TRINITY_DN48580_c0_g1_i12 |
|---|---|
| Name Transcript | Ll_transcript_336496 |
| Sequence | AGAAAAACACATTACATTACACAAGTTGTTGTGGTAATTGAAAGAAAGAGAAATCAAGTTGTTTTGGATTAAGTGCAATGAACATCACCTTCTCTTATTC TTCTTTGTTCACTTCTTCAACTCCTTCATTTTTACTCAAACACTTACACAACAATGTTTCCTTCTCTTCTACTCCTCCATTTCGCTCTTTTTCACTTTCC TCCCACGCCTCTAGGCTTCAAGTTCTCAACCCCATTGTCGAAATCGATGGTGATGAAATGACCAGGATCATTTGGAAGATGATAAAGGATAAACTTATAT TTCCGTACCTGGATTTAAACATAAAGTATTTTGATTTGGGGGTCGAGAATCGCGACGCTACCGATGACAGAGTTACTGTCGAAAGTGCTGAAGCCACTCT CAAGTACAACGTTGCTGTGAAATGTGCAACAATAACTCCTGATGAGACCCGAGTCAAAGAATTTGGATTGAAGTCTATGTGGAGAAGCCCCAATGGGACA ATCAGGAATATTTTAAATGGTACTGTTTTCCGTGAACCCATAATATGCCGCAACATACCCAGAATTGTTCCTGGGTGGAAAAAACCCATATGTATTGGCA GACATGCTTTTGGTGATCAGTATCGTGCCACTGATGCAATAATTAAAGGACCAGGGAAGCTGAAGTTGGTATTTGTCCCAGAAAATGGTGATGCTCCAAC GGAGTTTGATGTTTATGATTTCAAAGGCCCAGGTGTAGCGCTTGCTATGTATAATATTGATGAGTCTATTCGAGCTTTTGCGGAATCATCAATGTCATTA GCATTTGCAAAGAAATGGCCACTTTACTTGAGCACCAAAAACACAATTCTCAAGAAATATGATGGCAGATTTAAAGACATATTCCAGGAGGTGTATGAAG AAAGGTGGAGGGAAAACTTTGAAGAACACTCAATATGGTATGAGCATAGGCTAATTGATGACATGGTGGCATATGCGGTCAAGAGTGAAGGTGGATATGT TTGGGCTTGCAAGAATTATGACGGTGATGTTCAAAGTGATTTACTAGCTCAAGGTGATATAGAGAACTTATCATATATGCCCAAAATGGAACTATGATTG TATGTATTGATATTAATATATATGTTATATATATAACGTCAACAAGCAGTACTTGGTTGATTAACCAGCGACCTTGCATAACAATTCTGATTAGATCCAT GAAAAATGCTAGCAAAACTGTCTTGAGCTCAGTTCTCGTTATTGGGTTAATTTGATGTGGGATTCACTAAATCACACAGGTTAACTCTCTATTCAACGGG CCTACGTGAAATCTGATCAATAATATAGGGAAAAGTGTGTTAAAGAATATGTAGCTAGCATTGCTCTAAGATCCATTGTTCGATCCAAACTGTGAAAAGT GGTTGGATTTTTACCCATACAAAAAGGTATATGTATTATGAATCTGACCTGGCTCAATTAGTATGTAAATCCGGATGTCTAGAACTGGGATCGTTCGGAC TTTGTGATCTTTGTTTATTTGCTTTGAGTGGCTTATAATTATTGCTAGCTAATATTATCAAATAAATTAACTGATAACAAAGGCTTATGAAAATTTACCC ATATTACAGGTTTCCTGAACATTTATAAAAATACAAAGAAGAAAATGGCATTGCAGAAGATTTGAGATGAGAATAAGTTGTTTTGTAAACAAGGAACACC TCTGGCTTTTCATTTAGTAGGTCTATATTTGTGCATAACAGGAAATCGTTTTTTGTGTCTTCATAGCTAAACAACAATATGATGAATGGGGAGAGAGTAG CTAAGAAAGAGATGAATTCATTATTTTTTGCTGATTATTTGTTACTTAAATCTTGAAATTCTCACGTCATAACCATGATAGTATATGTCTGTTATGTGTG GTTGTTAATTTTATTTTTCTATTCTGAATGTACTTAAGAAATGGGAAAGAGAGCTTTGCGAACTTTGATGTCATGAATAATTCTGAGATGCTTGAAATTA TCTTTCAAATTAAGTTTCTTGAAGTCTATTTTTGTGTGCAGGATTTGGCTCATTGGGTCTCATGACCTCTGTACTGGTATGTATTAGTATATCATCATTA GTATGCCTATTTTGGTTATTGGATGTCAAACTTTATTTACAACCACTATTTTGTAGTTATCTTCTGATGGTAAGACATTAGAAGCTGAGGCAGCTCATGG AAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_162291; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_336496
| Blastp | Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial from Arabidopsis with 83.33% of identity |
|---|---|
| Blastx | Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial from Arabidopsis with 86.57% of identity |
| Eggnog | isocitrate dehydrogenase (NADp)(COG0538) |
| Kegg | Link to kegg annotations (AT5G14590) |
| CantataDB | Link to cantataDB annotations (CNT0002258) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426984.1) |
| Pfam | Isocitrate/isopropylmalate dehydrogenase (PF00180.19) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |