Ll_transcript_337054

• Id Trinity: TRINITY_DN48595_c7_g2_i9
• Name Transcript: Ll_transcript_337054
• Sequence: CCTAACTCCCCCACCGCCGCCACCGCCACCGCCACAGCATCAACTGGCTCGTATCCTATAAAGTTCGTCTCATTCTTCCTCCCTTTTTCACTCTAACCCT AATTTATTGCTCCCGTATCCCAAATTCCTAAAGGTTCGAATTTTCAGAATCAGTTGAGCAATGGCGGAACGTCGTCCTTCTAAGCGCTCCAAAATCACGA GGGGGGAAGATGATTATATGCCTGGAAACATTCTTGAGATTGAGCTTTATAAGTTCATGACCTTTGGGCACCTAAAGTGTAAACCAGGGCCCCGATTGAA TCTTGTTGTTGGACCCAATGGGTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTCGGCCTCTGTGGAGAGCCCCAGTCACTTGGGCGAGCAACGAGT ATTGGGTCATACGTGAAGAATGGAGAAGAGTCTGGCTACATTACAATTACATTGAGAGGGGACCATAAAGAGGAACGTATTACCATTACACGTAAAATAA ATAAAAACAACAAGTCTGAATGGTTGCTAAATGGAAATGTAGTGCCCAAAAAAGATGTTGCTGAAACCATTCAAAGGTTTAACATCCAAGTCAATAATTT GACTCAATTTTTACCACAAGACAGAGTCTGTGAGTTTGCAAAGTTAACTCCCGTGCAACTTTTGAAAGAGACCGAAAAGGCTGTTGGTGATGCACAGCTT CCAGAGCAACATCATGCACTAGTTGAGAAAAGTTGTGCTTTGAAGCAGATTGAGCTGTCTTTGGAGAAAAATGAAGAACGTTTAAAGCAGATGAAGGAGC TCAATGTTGAATTAGAGAAGGACGTTGAGCGTGTTCGTCAAAGAGATGAACTTCTTGCCAAGGCTGAAACCATGAAGAAAAAATTGCCATGGCTTAAGTA CGATATGAAGCAATCTGAATATCTGGAAGCCAAGGAGCGCCAGAAAGATGCAGAAAATGCATTGAAGGAGGCTGCAAAGATATTAAGTGATCTTCAAGAA CCTATTAAGAAACAGAAAAAAGAGAGGGATGCATTAGATGCAAAATGTCGAAAGGTTATGAGCTGCATAGCTGAGAATGCCAAGAAGCGAACCGAACACG TGGAAAAAGAGAATCTTTTGGAGGTTGAATTACAAGGAAAGTACAAAAACATGGAAGAATTAAGGAGGGGTGTAGAAAGTCGACAAGAAAGACTTCTTAA AGCTAGGGAGGAACTTGCTGCTGCTGAACTTGAACTTGAAGATGTGCGACCTTATGAAGCTTTTCAGGATGAACTTAAAAGACTAAAAGATGAATATTTG GAGTTGGATTCTTCTGCAAGACAAGTGAGGCAGAGTAAGTCCCAAGTGGAAAACGAAATGAGGCATAAGAGGTCATCCTTGATGCAGTGTAAAGAGAGGT TGAGAGATATGAATAATAAAAATACGAAGTGTTTGCATTTACTGCAAAAATCTGGGGCTGAAAATATTTTCGAAGCTTATAAATGGGTCCAAGAACATCG CAGTGATTTCAATAAGGAGGTTTATGGCCCAGTCCTTGTTGAGGTGAATGTCTCAAGTCAGCTTCATGCTGCATTTCTAGAGGGTCAAGTTGCTAATTAC ATTTGGAAGTCTTTCATAACACAAGATTCTAGTGACCGGGACCTTTTGGTGAAACATCTGAAGCCGTTTGGTGTCCCAGTTTTAAATTATACTGGTGTTG ATGGCCAGCAAAGAGAGCCTTTTGAAATTTCTGAAGATATGCATGCGCTTGGCATCTACTCCCGACTGGACCAAATATTTGATGCTCCTGGTGCTGTCAA GGAAGTTATGATTGAGCAGTTTATTCTAGATCATTCATATATTGGATCAAAAGAAACTGATCAGAAGGCTGCCGAGGTCCCAAAATTGGGAATTACTAAT TTATGGACACCAGAAAATCATTACCATTGGTCTAAGTCTAGATATGGGAATCATATCTCAGCAGTCGTTGATCAAGTTGGACGCCCACAACTTTTATTGA CCAATTTGGATATGGGAGAAATTGAGAAGCTGAGTTCCCAAGAAAGAGAGCTTGAAGAATCTATAGCAACTTTGGAGGAAAATGTTAAAAGGTTTCAAGA AAAGGAAAGAAGCTTACTGAATCAAGCAGCTAGTCGTCGTAAACAGTGGGAGGATATAAGCATTACAGCGAAGAATGAGAAAAGCAAACGTAAAGTGATC ACTGAACGTATTGCACAGAAGAGATTGTTATTGGAATCAAAGGAGAAGGAGGATAATATTGATACTCTGATGGCTAAGCTTTTTGATCAAGCTTCAAACT ACAAAATTGAAAGATTCCACAATGCAATGAAAATTAAGGATCTTCTTGTTGAAGCTGTGGGTTACAAAAAATGTCTCGTTGAACAACGTATGACTTTCTT TGAGCTGGATGCTAAGATTGGAGAATTGGAGGCCAATTTGAAGCAGCATGAGAATGTTGCTGTGCAAACTTCAACTCACTTTAATAACTGTAAGAAAGAG GCTGAGAATTTTCAACAGCAGCTTACAGATTACTTGAAGCATGCAAAATCTATTGCTAGGCTCACACCTGAGTTGGAGAAGGAATTTCTTGAGATGCCTA CTACAATTGAGGAATTGGAAGCAGCTATCCAAGATACCATTTCTCAAGCCAATTCAATCCTTTTTGTCAATCCCAACATATTGGAACAATATGAGCATCG TCAACGGCAGATTGGAGATCTTGCAGCAAAACTTGAAGCCAACAAGAAGGAATCTATGAAGTGTTTAGCTGAACTAAATGACATCAAGGGAAAATGGCTG CCAAAACTGAGAAACCTCGTGGCTCAGATAAATGAAACTTTTAGCCATAATTTTCAGGAGATGGCTGTTGCTGGAGAAGTTTCACTAGATGAACATGATA TGGACTTCGATCAATTTGGAATACTTATAAAAGTCAAATTCAGAGAAACTGGACAGCTTCAAAATCTGAGTGCCCATCATCAATCTGGAGGGGAGCGATC AGTTTCAACTATTGTTTATCTTGTTTCTCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATAAATCAAGGGATGGACCCAATAAATGAA AGGAAGATGTTCCAGCAACTAGTGAGAGCTGCAAGCAAACCAAATACACCACAGTGTTTCTTGCTCACCCCAAAGTTGCTACCCGATCTACAATATAGTG ACGCTTGTAGTATATTGAATGTAATGACTGGTCCTTGGATTGAGCAAACGTCAAAGGTCTGGACTAATGGTGATCGATGGGGTATTATCACTGGACTTGT ACAATAGACCAATTGCTAGGGAACTACATCATAAGGAATCTATTAAGTTTGTGAGATTTGCTTACCTTTTTTCATATGTATATTTTGTGGAGGAAAAAAA ACACTTTGCATTTGAACCAAAGTGTTCATGTTTCAGTGGTTGGATATGTCCAATATTGTAAATATCTTTGTCATAATTTAACCCTCGTTCCAGTATTTCC TGTATAATAGTAGTATGGTTGTACCCAACTTCTGGGGCAATATTCAAGGAATTTTGAGTAAGGAACAATTGTTGTCAACTTTAATAACTTGTTGATTGTA TGGTAGATCTGTTGCAATTCCATAGCACAGTCCTTAAAATAAGCCTTTCTAAAATCATGTTCAAATAAAGTGTTTGACATCTAATATAATGAAAGAGAGA AT
• Tissue: pods
• Gene name: LI_gene_162412;
• Additional information: details;

Expression of Ll_transcript_337054

FPKM

• PAB: 0
• PNAB: 2.4
• PS1: 1.7
• PS2: 0.5
• PS3: 0.8
• PW1: 0
• PW2: 0.3
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_337054

• Blastp: Structural maintenance of chromosomes protein 5 from Arabidopsis with 61.58% of identity
• Blastx: Structural maintenance of chromosomes protein 5 from Arabidopsis with 61.58% of identity
• Eggnog: Required for chromosome condensation and partitioning (By similarity)(COG1196)
• Kegg: Link to kegg annotations (AT5G15920)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019427495.1)
• Pfam: RecF/RecN/SMC N terminal domain (PF02463.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;