Id Trinity | TRINITY_DN48619_c2_g1_i5 |
---|---|
Name Transcript | Ll_transcript_369167 |
Sequence | CCTAATTGGGTTATGGGCTGACCCATTATAAGGTGAGGGAAGGAGCAATTTCTGAATCGTGTTTATCAAAACAAACCCTAGAACTAGAACCAGAGAGAGA GAGAGAGAGAAAGAGATTTTGATCGAGAAGATGAGGATTATGATAAAGGGCGGTGTTTGGAAAAACACCGAAGATGAAATATTGAAAGCGGCTGTTATGA AATATGGCAAAAATCAATGGGCTCGAATCTCTTCCCTTCTCGTTCGTAAATCTGCTAAACAATGTAAAGCTCGCTGGTACGAGTGGCTCGATCCTTCCAT CAAAAAGACCGAGTGGACAAGAGATGAGGATGAGAAACTGCTTCATCTTGCTAAGCTTATGCCCACACAGTGGAGAACCATTGCTCCCATTGTTGGCCGT ACACCATCCCAGTGCCTTGAGCGTTACGAGAAACTCCTTGATGCAGCTTGTGTTAAAGATGAGAACTATGAACCTGGTGATGACCCACGGAAATTGCGTC CAGGGGAGATTGATCCAAACCCTGAGTCGAAGCCTGCAAGACCGGACCCCGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCGGAAGCACGAGCTCG GTTAGCCAACACGAAAGGAAAGAAGGCGAAAAGGAAAGCCAGGGAGAAACAGCTTGAGGAAGCCAGGAGGCTTGCTTCTTTGCAGAAAAAGAGAGAGCTG AAGGCTGCTGGAATTGATATCAGGCAGCGTAGGAGGAAAAGGAAAGGAATAGATTATAATGCGGAAATCCCATTTGAGAAGAGACCTCCTCCGGGGTTTT TTGACGTTGCTGATGAGGATAGACCAGTTGAGCAACCTAAGTTCCCTACTACAATTGAGGAACTTGAGGGAAAAAGAAGGATTGATGTTGAAGCACAATT AAGGAAGCAAGACATTGCAAAAAATAAAATTGCACAAAGGCAAGATGCCCCATCTGCTATTTTGCATGCCAACAAGATGAATGACCCTGAAACGGTTAGG AAGAAATCAAAACTGATGCTTCCGCCACCCCAGATATCTGACCATGAATTGGATGAAATTGCGAAGTTGGGATATGCAAGTGACCAAGCAGGGATAGAGG AACTCGGAGAAGGTAGTAGTGCTACACGTGCTCTTCTGGCTAATTATGCACAGACACCCAGCCAAGGAATGACTCCCTTAAGAACCCCTCAGAGAACACC GGCTGGTAAAGGAGATGCTATCATGATGGAAGCGGAGAATCTGGCTAGGTTGAGGGAGTCCCAGACACCATTGTTAGGAGGAGAGAACCCAGAGTTGCAT CCTTCAGATTTTTCTGGGGTCACTCCTAAGAGAAAGGAAATTCAGACTCCGAACCCGGTGCTGACTCCCTCTGCAACTCCTGGAGGGACACCAAGCCTTA CTCCTAGAAGTGGTATGACACCAGCAAGGGATGGATTTTCTTTTGGCATGACTCCGAAGGGAACTCCTCTCAGGGACGAGCTACATATCAATGAGGACAT GGATATTCATGATAGCGCTAAGCTTGAGCTACAGAGACAAGCTGATTTGAGAAGAAGTTTGCGCTCTAGTTTAAGCAGCATTCCACAGCCCACGAATGAG TACCAGGTGGTGATGCAACCGGTTCCAGAAGATACTGAAGAACCTGAGGAGAAGATTGAAGAGGATATGTCTGATAGAGTAGCTAGAGAAAAGGCAGAAG AAGAGGCACGGCTGCAAGCACTGCTTCGAAAACGATCAAAAGTCCTTCAAAGGGGACTTCCTAGGCCTCCTGCTGCATCTTTGGAGCTTATTAAAAGTTC CTTGATGAGAGCTGATGAGGACAAGAGTTCCTTTGTCCCACCAACCTCAGTTGAGCAAGCTGATGAGCTGATAAGAAAGGAGCTTCTAACCTTACTGGAG CATGACAATGCTAAGTATCCTCTTGATGAGAGTAAGGAGAAAAAGAAAGGAGCCAAGCGTTCAGCAGCCAGGCCTGCTGTCCCTGTTATAGAAGATTTTG AGGAAGAGGATATGAAAGATGTACGTGCTTACTTATGTGTCTGCTCACCTTGTTAGCTTGGTCATCTTTCACCTTTTGGTACTCAAGTAACTTGATTTTT CACGTAGAGGGTGCACTTTCACTAATTTTCATTCCGTGCTGGCCTTAAAACTATAATTACACCTTCCATTTTTTGCCCAGCATTCTCTCATTTTTATATT TCACTTCTCATTCAGTCCCCTATAAACCAATTTATGAAGAACATTAATGCAATAGTTAAATGGAAAATAATAGGTACATCCTTTTATGAAAAAATAAAAA CTGTTATTTATTATGTTATTCTTCTTTAATATTCACTGTGATATCATTGGAGATGATCCTCTACTCAGAGTTGACAATATCTACTTTGCATTCTTTTTAT TTATATGCTATTCTTTGTAGGCTGATCAGTTGATAAAGGAGGAGGCCCAGTACCTTCGTGTGGCTATGGGGCATGAGAGTGAATCCCTTGATGAATTTCT TGAAGCACATATAACTTGCGTTAATGATCTTATGTACTTTTCCACCCGTAATGCCTATGGTCTATCCAGTGTTGCTGGAAACATGGAGAAGCTAGCGGCT TTGCAGAATGAATTTGAGAATGTGAGAAGTAAGTTGGATGATGGTAAGGAGAAGATAGTACGCATTGAGAAGAAGGCGATGGTACTCACGCAAGGTTATG AGACGAGGGCAAAGAAAAGTCTTTGGCCACAAATTGAGGCCACTTTCAAGCAGATGGATGTAGCGGCAACAGAATTGGAGTGCTTTCAAGCTTTACAAAA GCAAGAGCAATTAGCAGCATCACACAGGATAAACAATGTATGGGGTGAAGTACAAAAGCAAAAAGAACTTGAGAAAACTCTACAAAAGAGATATGGAGAT CTTATAGCAGAGCTTGAAAGGGTACAAAATATTGTGAACCACTACAGGGTACAAGCACAAGAAGAAATTGAAGCAAATAATCACAAACTTGAGGCTATTG AGAATACAGGTGATGAAACTAATGTTCAGGGTACTCAGAATGGAAGTGCTGTATTAGTTGATCCATCTGACACTGGAACTACTGGCCAACAAGCAGACAT TGTGCAAGATCAAGCTACTTGTACCTTAAAAAGTGATGTTATGGATGTGAATTCTGGTAAAGAGCAAACAGCACCTGACACTGATCTTAAATTGACAGAT AAACCGATTGTGGAGGATGACATTGCAAATGTGGTAGAAAGTAACAAACCTAGTGTTGACGAAGAGACCACAGTAGATATGAGTGTTGCAGTTGAAGTAA GTAGTATTGAGGGAAATAAGGAGGATAGAGATGTTGAGAATCTAGATGATGCTGTGGAAGATGTGAACCAAGGTGATAACTAGCATAAGAGAAACTGTCA GGAAGTTCTGATATATATTTTGGGGAGGCATGTTAGATTGAAGACCTGTTGCTCTATCCTGATTAATGAGTTCAATGCATCATTAATTAAATGAATTGCA TGGAGAGAATGAATCTAGTTTATTGGACAGTCAGAAACTGAAGTTTGTAATGTGTATGATCAAGTTGAGATGGTTTTCTATTTTTGTCAATTGCTGTCTT TACTTTTCACCAAGTGGATGTTGTGTTCTTATGCATGTTCTATAAAGAACATAGGATTTTGTCAATGAATTAGATTTGGATGCACCATGCCTTCTATAAA ACTTATTTTAGATCCCCTTTATAGCATTTTGTCCTCTGCAGATTGTTGAGCTATTTTCAGTTTGAGATTATGCTTTAAGGTTGTATGCCATATGAATGTT AACAACATGAATGTTAAGTCAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_162648; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_369167
Blastp | Cell division cycle 5-like protein from Arabidopsis with 81.33% of identity |
---|---|
Blastx | Cell division cycle 5-like protein from Arabidopsis with 80.62% of identity |
Eggnog | Myblike DNAbinding domain containing protein(COG5147) |
Kegg | Link to kegg annotations (AT1G09770) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019418954.1) |
Pfam | Myb-like DNA-binding domain (PF00249.30) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |