Ll_transcript_369228

• Id Trinity: TRINITY_DN48624_c4_g1_i1
• Name Transcript: Ll_transcript_369228
• Sequence: AAAAATAATTGGGTTATTATAAGAAGGTGAACTAGTTCCAATCGAACGATAAGTTCTTGATGTGCTGCACTCTACCCTACCTTTTCAGTTTTCATACTTC ACTTTCTCTCTTCCCATTCCATTTCGCGTGATCGGTGGTTGTAATTCAATAACATGGCTTCTTCAGAAACACCTTCTCCTTCTACACCTATTACTTCTGC TCCTACAGCTCCATTTTCTTACAACAACATGCCTCAAAATGTTATCAACACTTCTCATCACTCCTCTACATACTCGGTTGTTCAACATCCACTTCCTGCT ATGTCGTCGCATCCTGCTCCTTCGTTTAAATTCAATATTCCCCAAACTGGTCATGCCTTTTCTAGCAATCACCATCCACAATCTAACATGAACATGTCAG ATTCTGTTGCACAAGATGTTAATAAAGTGTCATCTGCATCTAGTATTCCAAATTCTGTCCCCCCTCATTCTTCTAATCCTACACGTCCAACTTATGACCC TAACTATCGGCCACCTACTTCATGGATGCCATCTGCCCCATCTTTCCCTATGCATCATGTTATCCCTGGAACTCCAGGGAACCCTGCTCCGCCTGGATTA ACACCCGCTCCAGTAATATCCTCCAATCTATCTGCTCCATCCATAAGCTCAGATTCTTCATCAGCTGCAGTTCCAAGACAGAATTTGCCAAGTGCAGCCA TTGCATCAGATCCTACTCTCCAGCAGAAGGGCACACCCTATCCATCCATACCAGTCATGGCCGCTTCCCCTCAGGGACATTGGCTACCACCTCCACAGAT CAGTGGCGTACTCAGGCCACCTTTTCTTCCATATCCTGCTGCCTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGTTACTCTCCCTGCTGTTCCAGTA CCTGATTCTCAACCTCCTGGTGTTACTCCAATGAGTGCTGCTGGCGCCACGTCTGCATCTCCTGCTTCAAGTCATCAGTTGAGGGGAACAACTGGTTTTC AGACAGAAGCGATTCCAGGGCATGCTGATTACAAGAAAACATTGAATGTGACACAGAATGAGAATCCTGCTAATGATCAATTAGATGCCTGGACAGCCCA CAAGACTGAAGCAGGAATTGTATACTATTATAATGCCTCAACAGGAGAATCAACTTATGATAAACCTGCTGGCTTTAAAGGGGAGCCTCACCAAGTTGCT GTACAGCCGACTCCAGTTTCAATGGTGAACTTGCCTGGTACTGATTGGGTTTTGGTCTCCACTAGTGATGGGAAAAAATATTACTACAACAATCAAACCA AGGTATGATTCACTAATGAATCTTTTTATTTTTTTAAATGATAGATCATAAAGAAAGCAAAAGAAAAGAATCAGAAAACTGAAATAATTTAATTTGTTTG GTTGAAGAAGTGTGTAAAACTCTGAAGGTTGCTTTTTGCCACTGCACTTGTTTTGGTGTAAGATCAGAATATGGTATTGTGTTAGGAGTGCTTCTTGGTG TATGTGGGATTTGCATGTTGGATATTTAACTTTGTTCAATAGAGAAAATCCTTATAGAGCCTGCACTAAATAGCTCAAGAGTTTAAGAGAGTTGGTCTCT GCAATGACTAATGGTTATAAGTATGATCCTTGCTACCTCCTTCCGCCATACTAAGTTAAATTTCTCCACTAGGCAAAGTGGACCTCTGCATTGTCCACGC TTCACACTCAAAGGAACTTAATGTTCTGGGTATACTAGAGATATAAAAACCACTCACGTGGGTCACTTTGAACAGTAGCTACTGGTATTGAGTATAGAGG TTCACTCAGTATATTTTGAGAAAATTGGAAATTTCAAATCCCCTTTCAAGTTAATATTTGGGTTGGACATCAGTTGTCAATAGAATTTATATTAACAAAT TATTTGTCACAAACTCACAATCCATATTCTTCACAGTTCCTTCCCTTGACTTGTGTGCAATGTCTAAATCAAGTTCTAAAACACCATGACAGTTATGTAA GATAGGTTATGAGCACTGGGTGTGCCTTACTTGGAGTTGGCTTTTGTGGGGTTTGTTTTGAAGGTGTGTAAAACCAAGGAGGCTAATTTTATTGTTGATA TACTATTGCAACATTAGGTGGTTTTTTGGTTAACTTTCCTAAATAGGAAATACATTCATAAAAAAATCTTATATTTTATTAAATATGTGATCTGTTCATA CATTTATTTAAATCATGATGACATTTCTCTGTTATTTCATTTTTATTTCCTGGCCTTTTGCTTTGTGTTAGACAAGTTGCTGGCAAATCCCGAATGAGGT AGCTGAATTGAAAAAGAAACAGGATGGTGATGTTAGAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAAAGGACCTGGAATGGTT ACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTGTGCAGAGCTCATCATCGGCACTAGATTTGATCAAGA AGAAGTTGCAGGACTCAGGAACACCTGTTGTCTCCTCTTCCATTCCTAATTCATCAGTAGGATCTGAATCAAATGGTTCAAAAGCAGCCGAGTCTACAGC TAAAGGCCTTCAGATTGATAATAACAAAGATAAGCAAAAAGATACTAATGGTGATGCTAATGTCTCTGACACATCCTCAGATTCAGAAGATGAAGATAGT GGGCCTTCAAAGGAGGAGTGCATACTTCAGTTTAAGGAGATGCTTAAGGAGCGTGGAGTGGCGCCATTCTCAAAGTGGGACAAAGAACTACCAAAGATAG TATTTGATCCACGTTTTAAGGCTATACCAAGTTATTCTGCTAGGAGGTCCTTGTTTGAGCATTACGTTAAAACCCGTGCGGAAGAAGAACGCAAAGAAAA ACGTGCTGCACAAAAGGCTGTAATTGAGGGATTTAAGAAGTTACTGGATGAAGCCTCAGAGGATATTAATCACAACACTGATTATCAAACGTTTCGTGAG AAATGGGGAGATGATCCACGGTTTAAGGCATTGGACCGCAAGGAACGGGAGCACTTATTGAGTGAAAGGTAGTAGGCTAATGACAGACTCCCGGATTCAC TGTGGGTGTGTCCTTATGTCCTCTGAACTCTTTGGATTTGCATGAGTGCTTCCTTTGAAGAAAGCTGCCACAGAAAAGGCCCAAGCAATGCGCGAAGCTG CTACTTCAAGTTTTAAGTCATTGATTAAAGAGAAAGGAGATATAACTTTTAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGAAGACCCAAGATA TAAATCTGTGAGGCATGAGGATAGGGAGATTTTGTTCAATGAGTATATATCTGAATTAAAAGCTGCTGAACATGCAGCAGAACGAGAAACCAGAGCCAAA AGAGAGGAGCAGGACAAGCTGAGAGAGAGAGAACGGGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACATGAAATGGAAAGAGTGCGGCTAAAAATTCGAA GAAAGGAGGCAGTGGCTTCTTTTCAAGCTTTACTTGTGGAGTCGATCAAAGACCCTCTGGCATCATGGACGGAATCAAAGTCTAAATTAGAAAAGGATCC TCAAGGACGTGCTGCTAATCCTGAACTTGGTCCAGCTGACATGGAAAAGCTCTTTCGTGATCATATAAAGATGCTTCAGGAACGCCGTGTGAACGAGTTT AGAGCACTCTTAGCTGAAGTCTTGACCATTGAAGCTGCATCCAGGGAGAGTGAGGATGGGAAAACAGTCCTTAATTCATGGTCTACTGCTAAACGCGTTT TAAAATCTGATCCAAGGTATAACAAGGTTCCCAGAGAAGAAAGGGAAACCTTGTGGCACCGGTATGCAGAGGATCTGCTGCGGCGGCAAAAGTCATCTCA TGATCCAAGGGAAGAGAAACATGCAGATTCTAAAGGTAGAGATGCTAAAGGTAGAAACCCTCATGAATCTGTATAACTTCCATTAGAAGGAATTGCCAGA GACTAAGATGATTAACT
• Tissue: pods
• Gene name: LI_gene_162715;
• Additional information: details;

Expression of Ll_transcript_369228

FPKM

• PAB: 0.3
• PNAB: 0.6
• PS1: 0.5
• PS2: 0.4
• PS3: 0.3
• PW1: 0.3
• PW2: 0.5
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_369228

• Blastp: Pre-mRNA-processing protein 40C from Arabidopsis with 44.94% of identity
• Blastx: Pre-mRNA-processing protein 40C from Arabidopsis with 53.36% of identity
• Eggnog: transcription elongation regulator(ENOG410XPZW)
• Kegg: Link to kegg annotations (AT3G19840)
• CantataDB: Link to cantataDB annotations (CNT0000254)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019413264.1)
• Pfam: WW domain (PF00397.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;