| Id Trinity | TRINITY_DN48624_c4_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_369229 |
| Sequence | AAAAATAATTGGGTTATTATAAGAAGGTGAACTAGTTCCAATCGAACGATAAGTTCTTGATGTGCTGCACTCTACCCTACCTTTTCAGTTTTCATACTTC ACTTTCTCTCTTCCCATTCCATTTCGCGTGGTAACCTCTTTTTATTCCCTTTTCTCAAAATCAATTAATACATCTCATTCTTTACCCTAATATTTGTAAT TCTATCTTTTGTTGCAGATCGGTGGTTGTAATTCAATAACATGGCTTCTTCAGAAACACCTTCTCCTTCTACACCTATTACTTCTGCTCCTACAGCTCCA TTTTCTTACAACAACATGCCTCAAAATGTTATCAACACTTCTCATCACTCCTCTACATACTCGGTTGTTCAACATCCACTTCCTGCTATGTCGTCGCATC CTGCTCCTTCGTTTAAATTCAATATTCCCCAAACTGGTCATGCCTTTTCTAGCAATCACCATCCACAATCTAACATGAACATGTCAGATTCTGTTGCACA AGATGTTAATAAAGTGTCATCTGCATCTAGTATTCCAAATTCTGTCCCCCCTCATTCTTCTAATCCTACACGTCCAACTTATGACCCTAACTATCGGCCA CCTACTTCATGGATGCCATCTGCCCCATCTTTCCCTATGCATCATGTTATCCCTGGAACTCCAGGGAACCCTGCTCCGCCTGGATTAACACCCGCTCCAG TAATATCCTCCAATCTATCTGCTCCATCCATAAGCTCAGATTCTTCATCAGCTGCAGTTCCAAGACAGAATTTGCCAAGTGCAGCCATTGCATCAGATCC TACTCTCCAGCAGAAGGGCACACCCTATCCATCCATACCAGTCATGGCCGCTTCCCCTCAGGGACATTGGCTACCACCTCCACAGATCAGTGGCGTACTC AGGCCACCTTTTCTTCCATATCCTGCTGCCTTTCCTGGCCCCTTTCCATTTCCAGCACGTGGTGTTACTCTCCCTGCTGTTCCAGTACCTGATTCTCAAC CTCCTGGTGTTACTCCAATGAGTGCTGCTGGCGCCACGTCTGCATCTCCTGCTTCAAGTCATCAGTTGAGGGGAACAACTGGTTTTCAGACAGAAGCGAT TCCAGGGCATGCTGATTACAAGAAAACATTGAATGTGACACAGAATGAGAATCCTGCTAATGATCAATTAGATGCCTGGACAGCCCACAAGACTGAAGCA GGAATTGTATACTATTATAATGCCTCAACAGGAGAATCAACTTATGATAAACCTGCTGGCTTTAAAGGGGAGCCTCACCAAGTTGCTGTACAGCCGACTC CAGTTTCAATGGTGAACTTGCCTGGTACTGATTGGGTTTTGGTCTCCACTAGTGATGGGAAAAAATATTACTACAACAATCAAACCAAGACAAGTTGCTG GCAAATCCCGAATGAGGTAGCTGAATTGAAAAAGAAACAGGATGGTGATGTTAGAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGAT AAAGGACCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTAGTGTGCAGAGCTCATCATCGG CACTAGATTTGATCAAGAAGAAGTTGCAGGACTCAGGAACACCTGTTGTCTCCTCTTCCATTCCTAATTCATCAGTAGGATCTGAATCAAATGGTTCAAA AGCAGCCGAGTCTACAGCTAAAGGCCTTCAGATTGATAATAACAAAGATAAGCAAAAAGATACTAATGGTGATGCTAATGTCTCTGACACATCCTCAGAT TCAGAAGATGAAGATAGTGGGCCTTCAAAGGAGGAGTGCATACTTCAGTTTAAGGAGATGCTTAAGGAGCGTGGAGTGGCGCCATTCTCAAAGTGGGACA AAGAACTACCAAAGATAGTATTTGATCCACGTTTTAAGGCTATACCAAGTTATTCTGCTAGGAGGTCCTTGTTTGAGCATTACGTTAAAACCCGTGCGGA AGAAGAACGCAAAGAAAAACGTGCTGCACAAAAGGCTGTAATTGAGGGATTTAAGAAGTTACTGGATGAAGCCTCAGAGGATATTAATCACAACACTGAT TATCAAACGTTTCGTGAGAAATGGGGAGATGATCCACGGTTTAAGGCATTGGACCGCAAGGAACGGGAGCACTTATTGAGTGAAAGGTGCCACTTAGTAT TTTAGTTAGCTATTCTATTTAGCTTTCACTGGTAGTATTAGTTGCATGTGAGTGCTCATATAGCAGCTTCCATTCCATCATATTACTCATTTATTCTTCA AGTTTCTCACCTGCCATTTGATGTTTTTTTCTGGAAGTTTTATGGCTGGGAATCTTCAGTTCCATATGTGGCATGTGTAACATGAAAATTTGACATTTCA TTTTCTTCTTTCATTCCTCGAGTTTTCTGGATTGTTTATCATGTACATTGGACATACAAAATATAGAAGACCAGCATTTATTTGGTTAAAATTATCTTAA TAGACATGTTTCTGAATTAATCATGATTGTAATGTATCCTTAAGTGGCAAACAAATTTTGGAGCTATTGTATTCAACCTGAGGAGAGAGGGATTTATCTA TAATGCAACCACCGTTTTGATACAGCATCATGTGACACATTTGAGTTTTGTTTGTCACATGAATGCTTTCTATAGTTTTCAGGGTTGATTGTGTTAAGGG GAGAGAAACATTAAAGTCATCCATGTTTCAGGCTTTCAGCTTAAATTGGTACAGTGGATGGGAAATAATTTGGTTGAAAATTTGATATGCAATACTTGCT TGGTGGTTGATACAGCAAAAATTACATTTGTTTGAGAATGAGATACATTTTTGTTTCAATTTTCACTCTCTATAGCATCTGCAAATCATCTAGGACTGAA ATCGCAATTTTGCATATGTTACACTTACACCCTCTTCATATTCCTTCTCTTCGAAGCATACATTAATTGCAAGAGAAGGGCATTATGTTACTGCTGCCCA TTTCCCTTTAACAAAACTGCATAAAGGTAAAGTAATAGAGACATGTTTGTTGAATGTGGGTGTTCACAATTTTATATTTTAACAGCATCAGCAGAAGCTG ACCCCACTTTGTGGGATAAAGGATTGGTTGTAGTTTAACAGCATCAGCACATTTGCTGCATGCAACAACTTGTCCAATAATGGATGCCTTCTTTTTAGCC AATCCTATTGATTTTATTAATTAAAATTTAGCATCAGACTGAGCTAAGTTCTTTACCTTTGTGTGTATAGATATTGCTATGGTTTGGATCCTCATTCGCA TAATATTGAACTTTTTGCTAGACAGAAATGATTTCTAATGATAATCCTTGAATGCAACATGAGTCAGCAGGTAGTAGGCTAATGACAGACTCCCGGATTC ACTGTGGGTGTGTCCTTATGTCCTCTGAACTCTTTGGATTTGCATGAGTGCTTCCTTTGAAGAAAGCTGCCACAGAAAAGGCCCAAGCAATGCGCGAAGC TGCTACTTCAAGTTTTAAGTCATTGATTAAAGAGAAAGGAGATATAACTTTTAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGAAGACCCAAGA TATAAATCTGTGAGGCATGAGGATAGGGAGATTTTGTTCAATGAGTATATATCTGAATTAAAAGCTGCTGAACATGCAGCAGAACGAGAAACCAGAGCCA AAAGAGAGGAGCAGGACAAGCTGAGAGAGAGAGAACGGGAGCTGCGCAAAAGGAAGGAAAGAGAAGAACATGAAATGGAAAGAGTGCGGCTAAAAATTCG AAGAAAGGAGGCAGTGGCTTCTTTTCAAGCTTTACTTGTGGAGTCGATCAAAGACCCTCTGGCATCATGGACGGAATCAAAGTCTAAATTAGAAAAGGAT CCTCAAGGACGTGCTGCTAATCCTGAACTTGGTCCAGCTGACATGGAAAAGCTCTTTCGTGATCATATAAAGATGCTTCAGGAACGCCGTGTGAACGAGT TTAGAGCACTCTTAGCTGAAGTCTTGACCATTGAAGCTGCATCCAGGGAGAGTGAGGATGGGAAAACAGTCCTTAATTCATGGTCTACTGCTAAACGCGT TTTAAAATCTGATCCAAGGTATAACAAGGTTCCCAGAGAAGAAAGGGAAACCTTGTGGCACCGGTATGCAGAGGATCTGCTGCGGCGGCAAAAGTCATCT CATGATCCAAGGGAAGAGAAACATGCAGATTCTAAAGGTAGAGATGCTAAAGGTAGAAACCCTCATGAATCTGTATAACTTCCATTAGAAGGAATTGCCA GAGACTAAGATGATTAACTTTTTAGCCTGATATTAGAACAGAATTATATGACATTGAATGAAGGCAAAGGTATAAGTGCTATGTTTACTGTATCACTCCA ATATACCTCAGATCATTCTGATCACATCATTTCACTTGTGTATCATTAATGTGAGAGTTTAGACAGTGCTCATCCTTTTCAATTTCCCCTTCCAACATGG TTTAGTAGATCATTTCATTCACAAACCTTAGTATTTGATTGTTCATAATACTTGTCTTTTGTGATTTTTAGATTCACAAACCATAGAAGCTTACAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_162715; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_369229
| Blastp | Pre-mRNA-processing protein 40C from Arabidopsis with 52.83% of identity |
|---|---|
| Blastx | Pre-mRNA-processing protein 40C from Arabidopsis with 51.82% of identity |
| Eggnog | transcription elongation regulator(ENOG410XPZW) |
| Kegg | Link to kegg annotations (AT3G19840) |
| CantataDB | Link to cantataDB annotations (CNT0000254) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413264.1) |
| Pfam | WW domain (PF00397.25) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |