| Id Trinity | TRINITY_DN48625_c2_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_369248 |
| Sequence | AGCATACACAGCACCAGTAATGTATAGGCGTGCATCTCATACTCACTATCTTAGTCTCCACACTGATGAGCATCCCGCAACTCCTCCCAACCTTTAAACT CCCAGTTCAACTCGGAAACCTAACAACACCATGGAACTGCAGATTACGAGAGCTCTCAAAGCAACGCCAATACCCACAAGCTCTCACTCTCTACATTCAC ATGCTTCGTTCTTCTTTCTCTCCCAACACTTTCACTTTCCCTTTCCTTCTCAAATCATGTGCCCATCTCTTCTTACCCTTCACTGGGTCCCAACTCCATG CCCATGTCATTCGAACCGGGACCCAACCTGACCCATATATCCGTACTTCACTTGTTTCTATGTACTCTAAATTCTCTTTACTCAACAATGCCCGCAAGGT GTTCGATGAATTTCCTTACTGGCAAAACATCACTATTTGTTATAATGCTATGATTTCTGGGTATACGTTTAACTCTAAGGTTAGAGAGGGGTTTGTTTTG TTTCATCGAATGAGGGAGGAAGGGGTGGAGGTTAATTCGGTTACGATGTTGGGTTTGGTTTCTGGGTGTACGGTTCCTGAGGATTTGACCATTGGTGTGT GTCTTCATGGGTTTGGTGTTAAGTTTGGATTCTATGGTGATTTGTCTGTGGTGAATTCTTTGCTCACTATGTATGTTAAATGTGGCGAGGTTGAACTAGC GCGGAAGTTGTTTGATGGAATGGGTGAGAGAGATTTGATTACTTGGAATGCTATGATTTCTGGGTACGCGCAAAATGGGCATGCTAGACAAGTTTTGGAA CTTTACCGTGAGATGAAGCTGGCAAAGATGAGACCTGACCCCGTGACGCTTCTTGGGGTTGTTTCGTCTTGTGCTAATCTTGGTGCTCAGAGCATTGGTC GTGAGGTGGAACGGCAGATACATTGCTGTGGGTTTAGTTCGAATACATTTTTAACGAATGCCTTGATCAATATGTATGCTAGATGTGGTAATTTGGTACG CGCTCATGCAATTTTCGATTGTATGGCTGAGAAAAATGTTATTTCATGGACGGCCATAATTGGTGGTTATGGAATCCATGGACATGCAGAAATTGCAGTC GGTCTTTTTGACGAGATGGTTGAGTCTGGCATCAGACCGGATAAAACGGTGTTTGTGACTGTTCTTTCTGCCTGCAGCCATGCAGGATTGACTGATAAGG GCTTGGAATATTTTGATGCAATGGAGGTGAAGTATGGTTTGAAGCCAGGTCCGGAGCACTACTCTTGCTTGGTGGACCTGTTAGGCCGGGCAGGTAGGTT GAAGGAAGCTATGGATCTCATTAAGTCAATGAAGGTAAAACCTGATGGTGCTGTTTGGGGAGCCCTTTTGAGTGCATGCAAAATTCATAAGAATGTAGAG CTGGCAGAGTTGGCCTTTGAACATGTCATTAAGCTTGAACCCACAAATATAGGTTACTATGTTTTATTATCAAACATATACTCTGATGCTGAAAACTTGG AGGGGGTTTTAAAAGTCCGAGTCATGATGCGGGAACGAAAACTTCGAAAGGATCCAGGATGTAGTTATGTTGAATATAAAGGAAAAGTGCATCTATTTTA CTGTGGGGATAGAAGCCATCTTCAAACGGAGGAAATATATAGAATGTTAGATAAGTTGGAAAGTCTTGTAAAGGAGATTCACGCACCAGCTGAGAAATAT CAAGGAAGGAGTGAAGGAGTCTTAAATACCGGGGTGCATAGTGAAAAATTGGCAATTGCATTTGGCCTCTTGAACACTACGTCTGGAACAGAGATTACTG TGATGAAAAACCTGAGAATCTGTGGAGATTGTCACTTATTTATTAAGTTGGTTAGCAAGATTGTCAATCGCCAATTTGTTGTTAGAGATGCCACCCGCTT TCACCATTTCAGAGATGGGGCTTGCTCTTGCAAGGACTACTGCCGATACCACCTAGTAGGACAGGACTTGATTGTTGCTGCTGGTGAGTGAGGAGAATGC ATCCTGTTGGGAAATTCTGAAAAATTTGCCAGACAGCAATGGAGTTTAAAAGTAAACATGGGATGCTCAACTTGGAAAAGGAAGACTTCAATATAACATA GGATTTGCAATTTTTACCAAAAGTATTGGGTTTCTGCTAACTTTAAAACAAGAGAATGAAAAGTCAGCAACCTTTCAAAGCACAAGTAATGCTTTGCAGC ACAGAGTTGGTTATGATATTATAGAAATTCAAGATTCAGTTTTATGCCTTTGTGGCCCTACAGTTTTCTATGGATTTCCTGAAGAGATTTCATTTGCATT TGAAAGCCATTTTGAGTTCCAATTGATGTTGAAAATAGAACATACAAAGGATGCTTACCGTTACCAGTAAGTTTATAAATGATGTGTGGTTGACCTATCA TTGATATATTAGCATTGTATATTCAAGATACAGTTCACTGAATCATAGTGGTTTGAAGTAGTGGCTGCAAAGTGATTGATTGATACAACCATCTTTTATA GTAATACACACAGTTATACTTTTTTTCCTTTCTATTTGATTTATCTGAAGTTTTGATTATGGAACAAATTTGTGCACTATGGTTCATGTTCTCACCTTCT AGGCTTCTATGTTGTGTGCAAAGTGCATAATGGCCCTTAGAGCATCTCCAATGGAGAATGAAACTTTTATTCTTATTTGGGTAAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_162722; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_369248
| Blastp | Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial from Arabidopsis with 61.55% of identity |
|---|---|
| Blastx | Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial from Arabidopsis with 61.55% of identity |
| Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
| Kegg | Link to kegg annotations (AT3G11460) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019426729.1) |
| Pfam | PPR repeat family (PF13041.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |