| Id Trinity | TRINITY_DN48640_c3_g4_i4 |
|---|---|
| Name Transcript | Ll_transcript_370118 |
| Sequence | CACAAAGGTCTATAAATTAAGTGGCACCCCTTATCATTATTCTTCACATTTCCACTTTACATTACCTCTCACTAGTTCAAGTCCAACATTGAAACTTCAA TTTCAAAGAAAAAATGGCTCTCGTTGGTTTAGTCTTGGTTAGCCTTCTCTCAATGTTCTCATCTGCCTATGGCTATGGAGGGTGGGTTAATGCACATGCA ACCTTCTATGGAGGGAGTGATGCATCAGGGACAATGGGCGGTGCTTGTGGATATGGGAACCTATACAGTCAGGGCTATGGAACAAACACTGCTGCTTTGA GCACTGCTTTGTTCAACAATGGCTTAAGTTGTGGCTCTTGCTATGAGATTAGGTGTGTTAGTGACCGTAAGTGGTGTTTGCCTGGGTCAATTTTGGTCAC TGCAACCAATTTCTGTCCACCAAACAATGCCTTGCCTAATAATGCTGGAGGATGGTGTAATCCTCCTCAGCATCACTTTGATCTTGCTCAGCCTGTCTTC CTTCGCATTGCCCAATATAGAGCTGGAATTGTGCCTGTTTCTTACAGAAGGTAAATTTTGTCTCCAACCCTATACCTTACTAGCTAGGAGCCTTGTGTTT TGGACCCTTGTAGTGGTGTTTTAAACTTGGTCACAATGCATTTTTTTGGTATAACCAATGGTATTCTTTATGAACTAATCTCTTTTGGAATACGTGGTTG TCCGTAACAAGTGTCACTCACAGCTGTGGAATCCTTGACTTTTGGCATAGTAAGAAACTGGGGATCTAGTGGTGCCTTAAAGGCTTAAACCACTAGATCG TCGGTAAGTTACTTTCGTTTACCGCAATTGTGAAAGTTGTGGAAAAATATGGCCGATGTTACAACAATTGAGTCCACAATGTTTTGGAAACACAATATTG CTGTTATGATTGTGATTGTGGAGTGAATAGTGACTAATCTGTGAGCCATTTTTGGGGTGTGGAATTGTATAGGGTTGCCTGCAGAAGAAGGGGAGGAATT AGGTTCACAATCAATGGTCACTCCTACTTCAACCTAGTCCTCATCACAAATGTGGGTGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCCAGAA CAGGATGGTCTTCAATGTCAAGAAACTGGGGTCAGAACTGGCAGAACAACAACTATCTCAATGGCCAAACCTTGTCCTTCAAGGTTACCACAAGTGATGC CCGTACTATTGTCTCTTACAATGTTGCTCCACCTGGTTGGTCCTTTGGACAAACATACACTGGTGCCCAATTCCGCTAGAAATGCTATATCCAAAGTTTC AATTCATAAATTTCCATACATTTCATTATATAGTTTGTTACAATTTCTCATTCCAAATTTAAGTGTTAGTATTAGTATGACTCTAGTATACTAAGGTATT AGATAGTATGCTACTTGTTAAGGGGTGTCTAGAAAGCGGGAATGGCCTATTTTAATCTAGCTCTTCATTGTGTTTATTTGATTGTGTTAATGGGGAGGGT CCTATTTTTTATGGCCTTCTTCAATGTTGGGGTCTCTTTTGTATAATCTTTGAATGATTTTAGAAACTTCTGCTGGTTAAAAGAAGCTGGTAGAGGTGAG CTTTTTATATGTAAACTACTAAGTAGGAAGAGGTGGACAATTGAACCACCCGCCATTAGTACTGGAATGGTATTATTTTCTCCATCTTTTTGGGAGTGTT GGAATCATTGTTTGCTTCCCAAATTGTTGTAAGCAGCATTGGCTTGATGTCTTTGGTTGTATTATTTACTTATTAGAGACTAAAAGTGTAAATTTTCTTA TTTCTGCCTGTAATGGAAATGAATTTACTGGTACTCTTGCTATCTCATTTT BLAST |
| Tissue | pods |
| Gene name | LI_gene_162872; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_370118
| Blastp | Expansin-A1 from Arabidopsis with 81.21% of identity |
|---|---|
| Blastx | Expansin-A1 from Arabidopsis with 89.84% of identity |
| Eggnog | loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found(ENOG410YCRV) |
| Kegg | Link to kegg annotations (AT1G69530) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019428201.1) |
| Pfam | Lytic transglycolase (PF03330.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |