Id Trinity | TRINITY_DN48644_c4_g1_i7 |
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Name Transcript | Ll_transcript_368774 |
Sequence | TTTCACTTATTCTCCAACTAAATGATGTAGTTTGTTCTATTTGATTTATTCTCCTACACGTAAACGTGACGAGGCTGAAGTTAACCCACATAGCGCACAG TTTATCCTTCGCACCCAAAAAACACGTATTTTAGCGTAAAACTTTTTTCAAATTGTTTTCTCCATTGTTACTGAATCTTCTTTGACTCTGAGGTTTCTCT CTCTCTCTCTCCTCAACTGCAAGGAATAAATTTCACCAACGCTTCTTTTTTTCTGTCGGGTTATGAGCTTATAACCGTTTCAAGATGCACATTAAGCAGA TTGTGATTGAAGGCTTTAAGAGTTACAAAGAACAAGTTGCAACAGAGCCTTTCAGTTCTAAAGTTAACTGTGTCGTTGGTGCTAATGGATCTGGGAAAAC AAACTTCTTCCATGCCATTCGTTTTGTTTTAAGTGATCTATTTCAGAACCTACGCAGTGAGGATAGACATGCACTACTCCATGAAGGAGCTGGACACCAG GTTGTATCTGCATTTGTGGAGATTGTGTTTGATAATTCAGACAACCGTATCCCGGTAATGATTTGATAATTTCTTTTTCCAGTAAGTTGCAGAAGGAGGA TAATTTTCAATTTTTTAATTGTTTCTTAAACTTTGTTTAAACATCACTTAATGCATATTTTCTTTTAGGTCTAGATAAAATAATGATGCTATTTTTTTTG TAGTAAACAGTTTATAGCAAAATCATGATTGCTATGGTGAGGAAAGTATAGCCTTATTTGACAGTTATTCTATTTCAATCACAGGATAAATTGTCTAGTG GCTGTTATGGAGCATATTCTCATGGGTTTTGCTAATTAGTCACCTTTCTTTTTGCTATTTTTAATCTCTATCTTTCATGTTGTGATGATTGGTCGTATAT TTATTTTCTTGTGTTGCGCTAATGAGTGCATATTAGTGGCTATACTGCTCAACGTATATGGAGAAATGCTGTAGGCATAAGGGAAAGATTTTTAGTTTTG GGTTAATGAAGATTTTTGTGATGACTGGATGAGTATTATGTTTTTTGCCCTTTAATTTTTTTGCCATATTTATCTAATTTTCTATATTGATTAATGTTCT TCTCAATTCCATTTTTGAAAGTCCTGGCGCCGATCTTATGGGTTTTGATGTTAAATACTTTCTGCTAGCCTTGACGTAATTTTATCAGTGATGAGATGTT CTTGTTTGGTCAGATATTTGAATATTTTTATTTTGATGACAGATTCTTTTAGTACAGTCACATTTTCATATACTTGTTTTAGGTCAACTATCCTTTTTTA AGGTTGCAAGTGAAAACTCAGTGTCAGTCCTTGCTGATGTGATGTATACATTGCTTCAATTTCCCTTTCTCTGTTCAGATGAGTGGTTTATGTTCCATAA CCACTTATTTGCAACATTTTGTTTCTTTGCATTATCTTAGTATCTGTCTGTGCCCCTGATTAGGTTGACAAGGAGGAAGTGCGCTTGCGAAGGACTATTG GTGCGAAAAAGGATGAGTATTTTCTAGATGGAAAACACATAACAAAAACTGAAGTGATGAATTTATTGGAGAGTGCTGGGTTCTCTCGCTCAAATCCTTA CTATGTTGTACAACAAGGAAAGATTGCTTCACTTACCTTAATGAAAGACTCTGAGCGATTGGATTTGCTGAAAGAAATTGGTGGTACCAGAGTTTATGAG GAGAGGCGCCGTGAAAGTTTGAAAATAATGCAGGAAACAGGTAACAAAAGAAAGCAAATAATTCAAGTTGTACAGTATTTGGATGAGAGGTTGAAGGAGC TAGATGAGGAAAAAGAGGAACTAAGAAAATATCAACAGCTTGACAAACAAAGAAAATCCTTGGAATATGCTATTTATAACAAGGAAGTTCAAGATGCTCA GCAGAAACTTACAGAGATAGAAGATGCTCGAGCCAAGATTTCTGAAACGTCGGCAAAGATGTATAATGACGTGCTTGATGCACATGAGAAATCCAAAGAT TTAGAGAATACATTGAAAGATGTAACAAAAGAACTTAATAACTTTAACAAAGAGAAAGAAGTTATAGAAAAACGACGAACGGAGGCATTAAAGAAGCACA CAGAGCTTGAGCTTGATGTCAAAGATCTAAAGGACAAGATCTCTGGAAATAAAAAAGCCAAAGAAGATGCTGTAAAACAACTTGGGACACTTGAGAAAGA AATTCAAGACTCGATGAATGAACTGGACAAGATCAGTCCTTCATATGAGGATCAAATTAGAAAAGAAAATGCAATTGCCAAGCGAATAATGGAGCGTGAG AAGCAACTTAGTATACTTTACCAAAAGCAGGGGCGAGCAACCCAGTTTCCAAGCAAAGCTGCTCGTGATAAGTGGCTTCAAAAGGAGATTGACGATCTTA AAGGAGTGCTTTCTTCTAACACAGGGCAGGAGCAAAAGCTTATGGAAGAAATTGACCGGCTTAATGGTCAGCTTCATGAGTGTGATGAGTGCATTAAGAG TCGTAGGTCAGAGATTACTACATTGGAATCTCTCATTACAAAATCACGTGAAGGGTTTAATCATCATAAAGAACAAAGAGACATTTTGCATGACGAGAGG AAATCCCTATGGGCCAAAGAGAATCAACTTACTGCTGAAATTGATAAGCTGAGAGCAGAAAAGGAGAAGGCTGAAAAGAGTCTTGATCATGCAATTCCTG GTGATGTCAGAAGAGGGTTGAATTCAGTTCGGAAGATATGCAGGGAGTATAAGATTTCTGGAGTTCATGGTCCTATTATGGAGTTGCTGAACTGCGATGA GAAGTTTTTCACCGCAGTTGAAGTTACTGCTGGAAACAGCTTATTTCACGTGGTTGTTGATAATGATGAGACATCTACCCAGATAATTAGACATCTTAAT TCACAGAAAGGCGGACGAGTTACATTTATTCCCCTTAACAGAGTGAAGGCTCCACGCATTACTTATCCACAGAGTTCTGATGTCATACCTCTTTTAAAGA AGTTGAACTTTAAACATGAATATACACCCGCATTTAGCCAGGTATTTGCTAGAACAGTGATCTGCAAGAATCTGGATGTGGCTTCAAGGGTTGCTCGTAA TGATGGTCTGGACTGCATAACATTGGAAGGTGATCAAGTAAGCAAGAAAGGTAGTATGACTGGAGGATTTTACGATCACAGACGATCAAAGTTGAAGTTT ATGAATATCATCAAGCAGAATGAAGACAATATTTACGAGAGAGAGGTCCAGTTGAATGAAGTTAGATCCAATCTAAAAGAGATAGATGATAAAATCACAA AAATTGTTACCGAGCAGCAGAAGATTGATGCCAAACGTGCTCATGACAAATCAGAAGTGGAACAGCTTAAGCAGGACATTGCTAATGCTAACAAGCAGAA GCAATTGGTTTCTAAAGCAATTGCAAATAAGGAGAAGTCACTTGTAGATGTCCAGAATCAGATTGACCAGCTCAAGGCTAGTATGGCAGTGAAACAAGCT GAGATGGGCACAGAGCTCATTGACCATTTAACACTAGAGGAAAAAAAGCTTTTGTCAGATTTGAATCCTGAAATCAAAGATCTTAAAGAGAAACTTGTTG CTTCAAAGGCCGAGCGTGTTGAGACTGAAACTCGGAAATCAGAGCTGGAAACTAATCTAACGACTAACCTTAGGAGAAGAAAGCAAGAGTTGGAGGTTGT AATATCATCTGTGGATGCTGATTTTTTGGATGATGATGCTGAATTGAAGGGTAAAGAAGAACTTAGTTCTGCTAAAAAATCGGTTGATGATGCAACAACG CAGCTTCGAGGAGTTTCTGAAAGTATAAAGGATAGGACAAGCCAAATTAAAAAGATCAAAGATGAAATGAATAAATTGAAGTCTTTGGAGGATGATTATG AAAGAAGACTTCAGGAAGAAGCAAAAGAATTAGAGCAATTGCTGAGTAAAAAAAATATCTATTCTTCTAAAGAAGACGAGTATACCAAGAAAATAAGGGA ATTGGGTCCATTGACATCAGATGCTTTTGAGGCGTACAAGCGGAGGAACATCAAAGATTTGCATAAAATGCTGCACAGGTGCAATGAGCAACTGCAGCAG TTCAGTCATGTAAACAAGAAAGCACTTGACCAATACATAAATTTTACAGAACAACGAGAAGAACTTCAGAAAAGGCAAGCTGAACTTGATGCAGGAGATG AGAAAATTAGAGAGCTAATATCAGTACTAGATCAACGGAAGGATGAATCAATTGAACGGACTTTCAAAGGTGTTGCTAGGCATTTTCGAGAAGTATTTTC GGAACTTGTCCAGGGGGGCCATGGCCATCTGGTTATGATGAAGAAGAAGGATAATGATAATGATGATGATCAAGATGAGGATGGTCCTCGTGAAGCAAAT CCAGAGGGGAGAGTAGAGAAGTACATTGGAGTGAAAGTAAAGGTCTCTTTCACTGGACAAGGAGAGACACAGTCCATGAAGCAGTTGTCTGGGGGTCAAA AAACTGTCGTTGCCCTTACACTTATCTTTGCCATACAGCGATGTGATCCAGCTCCCTTTTATCTATTTGATGAGATTGATGCAGCACTGGATCCACAGTA CCGAACTGCTGTTGGAAGTATCCATTTTATTATGTTATCTTCTTGTCATGCCAATTAACTCTTTTGTAATTCTTTAATTGATGTTTACTGCATACTGCAT CTTACGTTGCTTATTCCATAAAATTATACTAGTGCATATTGAAGGTGGGGTTTTTTGATGCATGTGATGAGTCTTCAACCGTTGGAGATTTAAAAGTAGC TATCATACCAAGTGATCCAGACACCAAATCTCACTTTTCCCCCATTTATTTTTAAATCTTAGTTTTTAGTGCCTGTCATTTAATAACTTGAAGCTTTAAA TTTTAGTGGTTATTTGTCATCCACAGTTTTGCAAGGATTATTTTTTTTTAATACCAACAGGCTTAAGCATAAGGGGATGAGCCTCGGCGCAATAGTAGTG TTGCTTACTTTGTGACCTGGATGCCATGGGTTCAAATCCTATAAACAACATTGTCACTTACGAGGGTAAGACTATATACTTTTGTCCTCCCCATACCCCA CTGAGTGGGAGTCTTGTGCATTAGGCAGTTCTTTTTTTCCTCCAACAGGCTTAAGCATGTGCTCTTTCTTTTAGTCAAGGTTCATAGCGAAAATGCTCAC ACATATATTCTGGTTTCTTTTCATTCCCTCACGTATTAGTTGCAAACACACCTCACGGACACTTGAACATGACAATAGACTGTTTTTGCATGAGAAATAT AATTTCAAATCAGTTTTAAAGGCTATCATTGCATGTTTGATTGGGAGAAGTATATTTTAGCTTTGATATTTTTCTATGAATGAGGGGTTATTGCTTTATA GCAAGCATGTTTCTCTTGATCTTATTTAGGGCTTATCTATACTGGCGATCAGTACGTTTTGAATGGAGAAAGGTCGGGAACTATTTACATTGAGATATTG GTTTATGGTGATATTTAAATATAAAAGTTCATTCATATTTAGTTGTTTAGTTGTTTACTATATTTTGATTGGCATCTTGTGTCTTTTATACTGTTGTGCC TTTGAGGATTCTTAACTTCCGTAGATATGATCCGACGCCTGGCAGACATAGCAAACACACAATTTATCACAACAACGTTCCGCCCAGAGCTTGTCAAAGT TGCTGATAAGATATATGGAGTGACTCATAAAAACAGGGTCAGCCGTGTTAATGTCGTGTCTAAGGAAGACGCACTAGAATTTATTGAGCACGATCAGACA CACAATGCTGAATAAGGTCTTACTAATGCTAGGACATTTTGAGGAGTAAGGGGCGTGGCTGGTTGTGATGTTGTCCATCTGGGACATTCAAGAGTTAGGT GCTTCTGAATTCCATGTTGTCAACCACATAAAAGTAGATTGCAGACTCCAGTTTGTCTTAATTCTTCAATCTGTTCTTCCTAGATTTATATAACCCAGTA TTGCTTCTCACCTGCTCTCTATTTGTGTAAATTCATTGGACTTTGTTAACATCAAAATGTTGTGCTTGTTGTGGTAAATTTGAGTTTGTTAACCTGCTCT CTCTATTTGCTAATACAATGTTTTAAATTCAGAGTTTCATATATGTATAAATTTGCATGTTATCTGAAAGCTTACTCACATTTTTATACAAGTCTTTGAT CCTTGTGCTTTTTCCTGATAGAACAATTGATATGTTTGTTGGTACATTTTAGTGTCAGAAAACATAATTCTGACTAATGTTGTTCTTATCGTGCATAATG GCCAACCCGTCTTTAATGTTGG BLAST |
Tissue | pods |
Gene name | LI_gene_162895; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_368774
Blastp | Structural maintenance of chromosomes protein 3 from Arabidopsis with 69.14% of identity |
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Blastx | Structural maintenance of chromosomes protein 3 from Arabidopsis with 69.57% of identity |
Eggnog | Required for chromosome condensation and partitioning (By similarity)(COG1196) |
Kegg | Link to kegg annotations (AT2G27170) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019434196.1) |
Pfam | SMC proteins Flexible Hinge Domain (PF06470.12) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |