| Id Trinity | TRINITY_DN48689_c0_g3_i2 |
|---|---|
| Name Transcript | Ll_transcript_370224 |
| Sequence | CATCTTTATCACAACTTACGTATTGTTCTCTTCATATATGCGGCTCTGATTATACACACAGGCAATCACTTGATTCAGCAAGTGATCCAAACCACTCGTT ATTCAACCCTTCGATCAGAGCCGTTCATCTTGATCATAGCGATTAGAATCATAGCACCTTCATCCCAAAAGTGCAATTGCAACGTTCTTCTCTCTCTCTT GATTCTGCGTTTCATCAAAAGTCAAAACCCTCTCTCTCTCTCTGAATCTCTTTCATATTAGATCGAAACAGCGAAGATAATAATGTTTGAACCAAATCGC ACTTAAGCAACACCTTCAAGGAAGCCAGCACCAACCTCAACAAGCTCTAAGAAAGGAAGCTTCTCTGGCTTGGTGAGATGGGGGACGAGACTTCCGATGC AATGAACCTCGATTTGAATCTGGGTCCAGGCCCGGAGCCACCAGCTGGGTCCACAGTTAATGAAGCTATGAACTTGGATGATTGGATTGATGAGCCTCTT AGATTTAGTGAAGCTGTGAGGCTTAGGTCACGGTGGAGATGGCGGCAGCTTCCTGTCACTCCTCCTCCTGCAGTTCATGTTCATTTTCCAGAAGTGCCAC GGCATTTGCATTTTCATATACCACCGGAAGCTCGAAATATCTCTATGGAATTGAACCAGTTTCTGGTCAATTCGGGTAATGGAAGTCTCTTACAGACGGG TGAAGGCAGTGTGGCTGCTGAGGAGAGAATAGAGGTGGAGATTCCCAAGGCATGTGAAAACAATAATGGTATTATGGAGGATGAGACAACGGTGAAGAAG GATGATGTTGAAAAGGGTAGTGGCAATGTTGGGGATTTTTTCGATTGTAATATCTGTTTGGACCTGGCCAAGGATCCTGTTGTGACTTGTTGTGGTCATT TGTTTTGTTGGCCATGCCTGTATCGTTGGCTGCATTTACATTCGGATGCTAAAGAATGTCCAGTTTGCAAGGGAGAGGTGACTCTGAAGAATGTTACCCC GATTTATGGTCGTGGAAACAACGTTCGAGTTCCTGAGGAGGACGCCACTCTTAAAATCCCTCTCAGGCCCCATGCTAGGCGTGTTGAGAGTTTGAGACAA ATCCTTCAGAGAACTGCACTCACATACCCCGTCGAAGAGATGATTCGACGTCTTGGAAGCAGAATTGATCTTACTCGGGATTTTGTTCAGGCAGGTGAAA CGCTTGAGAGAACCAGCTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGTATCCGGAGAGAGCAGAACGCCGGGGCACCCCCGGATGATGTGGTGGGTTT GACTCAGAATAATCCTCTTGAGGCAGGGGATAGTCGAAGGCTCCATTCCGTTTCACTTCGAAGAACACAATCAAATAGAGCAAGATTCACATCAGCACTG AGTAGTTCTGCTGAAAGGTTAGTGGATGCATACTTCAGTAGCCAGCCATTTGGTAGAAACAATGAACAACCTCCACCAGTTGATGACAGAGATTCCTTTT CAAGTATCGGTGCTGTCATAAATTCAGAGAGTCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTATCCTTATCAACTTCTTCCTCTAGAAGGAGAAA TGATACTTCAAGAGTTTCTGATGTGGACAGTGGAGATTCTCGTGCTACAAGGCGTAGACGTTTGAACTGATAGAGAAGTCCTCTAGATCGAGTTATTACT ATTCTGTCATGTAACACATATGATAATAATTTTCCAACACCTATACCTATTTCATTGGGCAAGGTCAACAGCAATTCAGGCTCATTGTTTTCGCTGTCAA TAACGCAGGTTGTGCTTTCAGCTAAGTTGTTTTGGAGTTAATATAAAACATGCTAGGCTAGTAGCTACTCTTCGTTTTTGTAATCTAGTATAATAGTATT ACTGATTCTATATTCTGGTAATGTGCTTCTCCTTGCTGCATGAATCTTAGTGTTACCCTTGTATGATAGTGTCAAGCATAAATTCTCGGAGAAAGGATTT AAGCTGTAATATGAAAACACCTGAATGTTTTTGCATTTAACAAATAAATATAGTCACAGACTTGTTTTCGTATCATATTAGCTCGTAAAAGCCAGAGACG GGTACGTGGCTATGGTTGTGTTAAACACTCCCATATAACATTCAACACCCATCAACAACCAAGGTGCATGCAGCCTTGGTTACGAGCGCGTAGCCTTGCC ATTCAAACATGTGTCCTTAACATATTGTGAGATCTCTAGAATCCTTACATGTTTTATCAAACATTGGGGATAATCATCCCAATCCATTGAATCCAACATT GTGCACCATTCTTCTATGATTG BLAST |
| Tissue | pods |
| Gene name | LI_gene_163262; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_370224
| Blastp | E3 ubiquitin-protein ligase RMA3 from Arabidopsis with 45.16% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RMA3 from Arabidopsis with 41.03% of identity |
| Eggnog | Ring finger protein(ENOG4111IHV) |
| Kegg | Link to kegg annotations (AT4G27470) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019419619.1) |
| Pfam | Ring finger domain (PF13639.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |