Ll_transcript_421549

• Id Trinity: TRINITY_DN48742_c0_g1_i2
• Name Transcript: Ll_transcript_421549
• Sequence: AAAATGTCAAAACAACACAACATAACATTGGAGTGAGAATCAATTAACAGAATTTATTTCAACAACACACGCTATGAATATCAGCATTACATTGAGAGAA AGTGTGGGAGAGAGGGACCATCTGTGTGAGTTATAACAAAGTGTAGTAAGCAAAGTGTCCCTTCATTTTCAAAAACCAGATTCACACTTCTCCTCATGAT CATGCTGGTTGGGTTCAACTGAAGTAAAGTTTTTCTCTCATCCGCAAAAAACAATAATACAAGTCTAGTGTTTTGGAGAAAAAGCAATATATAACAATGT ATGGGGATTGTCAAGTTATGTCAAATATGGGAGGGAACGTAGTAGTAAACTCAGATTCTCTCTTTTCCTCTTCGATTCAGAACTCTAACTTCAACTTCTT GCCCACTATCCCTTTCCAACCTTTTCCTCCCTTGAAAGAAGAAGATGGGATCTTGGCAGGGAAGGAAGAAATGGAGAGTGGTTCAGGTAGTGAACAAGTT GAAGACAAATCCGGGAATGAACAAGAGGGTGAACAACCTCCAAAGAAAAAACGTTATCACAGGCACACTGCTCTCCAGATCCAAGAAATGGAAGCTTTAT TCAAGGAATGTCCACACCCAGATGACAAGCAAAGGTTGAAACTGAGCCATGAGTTAGGTCTAAAACCACGCCAGGTCAAGTTTTGGTTTCAGAATCGCCG AACCCAGATGAAGGCACAACAAGATAGAGCAGATAATGTGATACTTAGAGCTGAAAATGAGAGTCTAAAGAATGATAACTATAGGCTACAAGCAGCGCTG CGTAATATTATATGTCCCAATTGTGGTGGTCCGGCCATCATGGGAGCTGATATGGGATTGGATGAACAACAGCTTCGCCTTGAAAATGCTCGCTTAAGAG AAGAGTTAGAACGTGTGTGTTGTCTGACATCAAGATACACTGGCCGCCAAATCCAAACAATGGCACCACCACCCTCTCTTATGGATCCTTCCTTGGATTT AGACATGTGCATATACCCAAGACACTTCACAGATCCTATACCTTGCACACAAATGATTCCTGTGCCAATGATGCCACCTCCTGAAGCCTCATCATTCCCA GAGGGTTGTCTTTTAATGGAAGAAGAGAAGCCTCTAGCATTGGACCTTGCAGCCTCTTCCATAGATGAGCTTGTGAGGATGTGTCATACACATGAACCAC TTTGGATCCGAAGTAGTGAGAATGTAATGGAAGTGCTTAATTTTGAGGAGCATGCAAGAATGTTTCCATGGCCTATGAATCTTAAGCACCGAAGTGAAGT AAGGAGAGAAGCTAGCCGTGACAGTGCTGTGATTATAATGAATAGTGTCACTCTTGTTGATGCCTTCCTTGATGCTCAAAAATGGATGGAGCTGTTTCCA ACAATAGTTTCTAGAGCGAAAACGGTGCAAATTATATCTTCTGGTGCTTCTGGTCATGCATGTGGATCTCTTCAGCTCATGTACGCGGAGCTTCAAGTTC TTTCTCCTTTGGTATCCACTCGTGAGACTCATTTCCTTCGGTATTGTCAACAAAATGCTGAGCAGGGAACCTGGGCCATTGTTGATTTTCCACTTGACAG CTTTCATGAAAATTTTCACCCTTCTTATCCTAGATACTGCAGAAGGTGCTCTGGTTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACTTGG GTTGAGCATGCAGAAGTAGAAGAGAAACCAGTACATCAGATATTCGGTAACTATGTCTACAGTGGAATAGCATTTGGAGCACAACGCTGGTTAGGAGTTT TGCAGAGACAATGTGAGAGGGTCGCAAGCCTCATGGCCAGAAATATATCAGATCTTGGAGTGATACCCTCGCCCGAAGCAAGAAAGAATTTGATGAGTCT AGCACAAAGAATGATTCGGACATTTAGCCTTAACATGAGTACCTCAAGTGGTCAATCATGGACAGCCATATCTGATTCCCCTGAAGACACTGTTAGAATC ACAACTAGGAAAATCACAGAGCGTGGTCAACCTAATGGAGTGATTCTCGGTGCTGTTTCAACCATTTGGCTGCCCTATCCTCACACCAAGGTCTTTGATC TCCTCAGGGATGAACGTCACCGATCTCAGATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCTAATGGTTCACATCCAGGAAA CTGCATTTCCCTTCTTCGAATTAATGTGGCAAGTAACTCATCCCAGAACGTGGAGCTTATGCTGCAAGAGAGTTGCACTGATCAATCTGGTAGCCTAGTA GTCTACACCACCATTGATGTTGATTCCATTCAGCTAGCAATGAGTGGTGAGGACCCTTCCTGCATTGCCCTTCTTCCACAAGGGTTCATGATAGTGCCAA TGGACACACCAAACATTGGTACTTCATCTGAACCTGTCACAGGACCTTTGCCAAATACTACAAGTGTCAATTCAGGGTGTCTTCTCACTGCTGGGCTTCA AGTTCTTGCAAGCACAATCCCTTCTGCGAAGCTCAATCTTTCGAGCGTGACCGCAATCAACAACCACCTCTGCAACACCATGCATCAGATTGAAGCTGCT CTTTGCAGCAGCACTAGCAGCTGTCATCATGAGAATAATGGCACTTTTATTGGATCTTGCACTGAACCCACCACTAGTGGTGCACCCCCTAAGTAGTGAA AACTTGATTTCTTCTTACCCATGTTTATTTCTCCTATGATCTTTTGGATTTATGGGTTTATAGTTGTAGTTAGTGTGGAATGCTAGCAACATACTCTTTT ACAAAGCTCTCTTCATCATACTCATTATTAGAAGGTGAAATTCATGTGAAACCCACTAAGCTTTGTTTTAGTGGGTTTCACTTGAAATTCACCAGAAATT TAACAGTTTATGGAAAAGAGTATGTTACGAGTATTTCTTGAATAATGAAGTCAATAGACTAGACAAATGGGGAAGTAACATGGGTAAGAATTTTTTTAAA TAAAGATGTGTTTGACTAGGAATTAATGAGATAGGTGAGTGTGTCTTAGAAAATTAAGTTGTGTGGTATTTATGAATGTGTGTTTTGTACTAGAGTGAGG GTAGAATGGAATGGGATTTATATGTAATGTGTGGGGTAGAGGGACTAGGGGAGTCAAGAACGCACCAGATAGTACCCTAGGCTTTTCTGGTAAGGCCTTT TTCGTTTGGGACGTGATGGCCTTTTTCACTAGTAAGTATTTAAGGGTAGTGGTGGTTCGGGTATTGACTCCTGCTTCTATATCAGCCTTTACTACTGTTC ATTTCAACGTTTATGATGATTCAACTTAATTTGCTTTATTGAATCATGCTTAACATACTTTATCAGCATAAAAAAACTTACCTTTAT
• Tissue: pods
• Gene name: LI_gene_163639;
• Additional information: details;

Expression of Ll_transcript_421549

FPKM

• PAB: 0
• PNAB: 5.8
• PS1: 4.2
• PS2: 3
• PS3: 0.5
• PW1: 6.9
• PW2: 2.8
• PW3: 0.4

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421549

• Blastp: Homeobox-leucine zipper protein ROC3 from Oryza sativa with 54.73% of identity
• Blastx: Homeobox-leucine zipper protein ROC3 from Oryza sativa with 59.71% of identity
• Eggnog: Homeobox-leucine zipper protein(ENOG410YCQU)
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019423575.1)
• Pfam: Homeobox domain (PF00046.28)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;