Ll_transcript_421645

• Id Trinity: TRINITY_DN48745_c4_g1_i5
• Name Transcript: Ll_transcript_421645
• Sequence: CTGTACCAAATTTTATTCGGTTCGACCCAGCCAAGTCACACATGTGGAATGGTAATTAGATATGATGATCCTTCAATTAGATTCCTTCTAAATTTCTAAT ATCACAAAAGGGCACAATCGTAAATATATTAGTTTCATGCATCTTCTTCATCCCAATTGTGCTTAGTTGCTGCAAAACTCTTAAACCCTAACCAAGCCAC TTCAACCACATCACTTGTGATTCTCACCAGTTTCAATTTCTGAACATAAAACAAAACCGTTTCTGCCAACTCATCAATTCGAAGATTTGTTTCTTCACCT CGTTTTCTTCCAATTTCGATCATTTGTGTTAAATGGCCAATAATTCTCAGCCCCCTGGTATGCAGTTTCGGCCAGTCATTCAATCTCAGCAAGGACAACC ATTTGTTCCAATGACTTCACAACAATTTGGACATGCAGGACATGCTATACCGTCCTCAAATGTTGTTCAGAGTCAGCAAGTGCAGTATTCTCAACCAGTG CAACAGTTGACTCCAAGACCAATTCAGCCTGGTCATCCTGCACCCCAGGCTCCTATGCCATATATTCAGACAAGTAGGCCACTGACATCTGCTCTACCAC ATTCACAGCAAATGGTTTCCCATTTAAGCAATCATATGCCTGGCTTGGCTGTGTCAGGAGCACCTCCACATCCTTCATATACTTTTGCACCATCTTATGG TCAACAGCAAGACAATGCTAATGCATTGGCTCAATACCAGCCTCCTCCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGTTGTCCTCTGTATCTCAG AGTGCTTCTGCTGTTACACCAGTGCAGCAGGGTGGAGTACAGTCATCTGATTCTACATCAACTGATGCAAGAACAAGTACCCCTAACCAGCAGTCCTTAT CTGATTGGCAAGAGCATACTTCTGCTGATGGAAGAAGATATTACTACAACAAGAGGACAAGGCAATCTAGTTGGGAGAAACCTTTGGAGTTGATGTCACC TATTGAGCGGGCAGATGCATCAACGGTGTGGAAAGAATTCACTTCTTCAGATGGGAAAAAGTATTATTACAACAAGATTACTCAGCAATCAACATGGTCA ATACCAGAGGATCTTAAGTTGGCTCGTGAACAGGCACAGAAAGCTGTGAACCAGGGAGTCCAGTCAGAAACAACTGATGCATCCAATGCTGTTGTCTCCT CTAATGCAACATCAACAGATGCTAATGTAGCTATTTCCAACACTTCTTTGACATCAAATGGGATTGCTTCAAGCCCTGCTTCTCTCCCACCTATCGGAGC CGCTGATCCGCAACATTTGATTTCTGGATCAGGGACCCCTGTTTCCCACTCTATCGTTACTCCTGGATCCACTGGAGTTGAACAAAGTACCATGACAATC ACTGAATCTATAACAGTTGCAGGAAGCTCAGGAGCAGCTACCGATTCACTCGATTCCAAAGTGCCATCCATTGTTGAAAATCAAGCATCTCAAAATTTTG CTACTTCCATCACTGGAGCTTCTCTTCAAGATATTGAGGAATCCAAAAGAGGAGTGACAGGGGTTGGAAAAGTTAATGTGACTCCACCTGAGGAGAAGGC CAATGATGATGAAACTTTGGTCTATGCGAATAAGCTGGAAGCAAAAACTGCATTTAAAGGGCTTTTGGAATCTGCGAATGTTCATTCTGATTGGACATGG GAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCGCTAAAAACACCTGGTGAACGAAAACAAGCTTTTAATGAGTACTTGGGCCAAAGGA AGAAGATAGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCTCGAGAAGAATTCACTAAGATGTTGGAAGAATGCAAAGAACTTACATCATCCATAAG GTGGAGCAAAGCTATAAGTATGTTTGAAAATGATGAGCGATTCAACGCTGTTGACAAACAAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAA CTTGAGAGAAAGGAAAAGGAAATTGCTGCAGAGGAACACAGGCAGAATATAGCGGAATACAGGAAATTCTTAGAGTCCTGTGATTATGTGAAGGTGTATA GTCAGTGGCGGAAAGTCCAAGATCGGTTAGAGGATGATGATAGATACTTGAGACTTGAAAAAATTGATCGCTTGCTTGTTTTCCAGGACTATGTACGTGA CTTGGAGAAGGAAGAAGAGGAGAAAAAAAGAATACAGAAGGACCGAGTCTATCGGGGCGAAAGGAAAAACCGTGATGCATTTTGCAAGTTGCTGGAAGAA CATGTTGCTGCTGGAATTCTTACTGCTAAAACTCAATGGAGAGACTATTGTTTGAAGGTCAGGGATTTGCCTCAATACCAAGCTGTTGCGTCAAATACAT CTGGTTCCACTCCAAAAGAAATATTTGAGGACGTTGCTGTAGAACTTGAAAACCAGTATCACGAAGACAAGACACTCGTAAAAGATATAATCAAGACGAG CAAGGTTACTGTAGTGTCTACATCAGTGTTTGAGGACTTTAAGTCTGCTGTCTCGGAAGAAGGTTGCAAAACAATATCTGACATCAATTTGAAGCTTGTA TACGAAGAATTGCTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGATGATTTCACTAGCTTGTTATATACATTTA AGGATATTACTACTTCTTCACAATGGGAGGATTGCAAGCCACTCTTTGAAGAGACACAAGAGTACAGGTCCATTGGGGATGAAAGCTACAGTAGAGAAAT TTTTGAACAGTACATTACGTACTTGGAGGAAAAAGCTAAAGAGAAGGAACGCAAGCGTGAAGATGAAAAGGCTAAAAAGGAGAAAGAAAAAGAAGAGAAA GAAAAACGGAAGGAGAAGGATAGAGAACGTGAGAAAGAAAAGTCTAAGGAAAGACATAAGAAGGTTGACACAGATAGTGAAAATCAGGAAATAAATGACA GCCATGATTACAAGGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGGAAGAGGCGCCAGAGCAGCATAGAGGATGTTGATTCTGAAAGGGA TGAAAAGGAAGAGTCCAAGAAATCACGAAGACATGGCAGTGACCGCAAGAAGTCTAGGAAGCATGCGAACTCTGAATCAGATAACGAAAGTAGGCATAGA AGACACAAGAAGGAGCACCGGGATGGTTCCAGAAAAACTGGGGGCCATGTGGAGCTTGAAGACGGGGAGCTCGGTGATGATGGTGATATTTAATTGTTCG TTGTAGTGGAAACATCTGACTTAGGATCTTGAAGTGCAAAACGAGTTTTAGAGTACTAATTTTAATTTTACACCAGCCACTTTTGTTTAGATGTTCATCT TTTGCTGATTATATAGCAGATAAATTTGGAATCCTATGGATAGACTTACTTCTTTTAATAACGTTATTATTAGTAGAACATTGTATTTTATATGAATTCA GCATCTGAAGTCATTTCATTCTTCCTCGTCTTTCCTGATGCTGACATGGAAAAACCG
• Tissue: pods
• Gene name: LI_gene_163653;
• Additional information: details;

Expression of Ll_transcript_421645

FPKM

• PAB: 0.3
• PNAB: 1.5
• PS1: 1.8
• PS2: 1
• PS3: 1.3
• PW1: 0.7
• PW2: 0
• PW3: 0.7

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421645

• Blastp: Pre-mRNA-processing protein 40A from Arabidopsis with 55.5% of identity
• Blastx: Pre-mRNA-processing protein 40A from Arabidopsis with 56.11% of identity
• Eggnog: PRP40 pre-mRNA processing factor 40 homolog(COG5104)
• Kegg: Link to kegg annotations (AT1G44910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436968.1)
• Pfam: WW domain (PF00397.25)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;