Ll_transcript_421649

• Id Trinity: TRINITY_DN48745_c4_g1_i7
• Name Transcript: Ll_transcript_421649
• Sequence: CTGTACCAAATTTTATTCGGTTCGACCCAGCCAAGTCACACATGTGGAATGGTAATTAGATATGATGATCCTTCAATTAGATTCCTTCTAAATTTCTAAT ATCACAAAAGGGCACAATCGTAAATATATTAGTTTCATGCATCTTCTTCATCCCAATTGTGCTTAGTTGCTGCAAAACTCTTAAACCCTAACCAAGCCAC TTCAACCACATCACTTGTGATTCTCACCAGTTTCAATTTCTGAACATAAAACAAAACCGTTTCTGCCAACTCATCAATTCGAAGATTTGTTTCTTCACCT CGTTTTCTTCCAATTTCGATCATTTGTGTTAAATGGCCAATAATTCTCAGCCCCCTGGTATGCAGTTTCGGCCAGTCATTCAATCTCAGCAAGGACAACC ATTTGTTCCAATGACTTCACAACAATTTGGACATGCAGGACATGCTATACCGTCCTCAAATGTTGTTCAGAGTCAGCAAGTGCAGTATTCTCAACCAGTG CAACAGTTGACTCCAAGACCAATTCAGCCTGGTCATCCTGCACCCCAGGCTCCTATGCCATATATTCAGACAAGTAGGCCACTGACATCTGCTCTACCAC ATTCACAGCAAATGGTTTCCCATTTAAGCAATCATATGCCTGGCTTGGCTGTGTCAGGAGCACCTCCACATCCTTCATATACTTTTGCACCATCTTATGG TCAACAGCAAGACAATGCTAATGCATTGGCTCAATACCAGCCTCCTCCTCAAATGCTTGCACCTCCTGCTGGACAACCTTGGTTGTCCTCTGTATCTCAG AGTGCTTCTGCTGTTACACCAGTGCAGCAGGGTGGAGTACAGTCATCTGATTCTACATCAACTGATGCAAGAACAAGTACCCCTAACCAGCAGTCCTTAT CTGATTGGCAAGAGCATACTTCTGCTGATGGAAGAAGATATTACTACAACAAGAGGACAAGGCAATCTAGTTGGGAGAAACCTTTGGAGTTGATGTCACC TATTGAGATATCATGGCAAGTCAGGAGACATTTTAACAACTGCTCTATATGGTCACTGTGAAGCGGTGGTTGTACTTTCTCAAGGCAGGCAACAGTTTGC TATTTACATTATTTTATTTATCTTAAAAATGTGACATTTGGTGCATAAATGTGGTTCTGCAGTACCGTTAATGATGGTTGATTGCAGCCTACCCATCAAC TTCCTCCAGCGGTTTTGTAGGGTTATTCTTTATGGGGTGTGCATGTGTTTGTGTAGTATTGATTGTTTCCTTTGTCAGTTTCTTTGCTCTCGCTACACCA CACAAGCATAAATTGTGTGCCTTTATGCTCTATGTCATCTTCCTTTTTTTGCCGCTTTCTCCATCTCTGATTTTGTCTCCTCACATTTTTATGATCTTGT TTCAGTGCTCTATGTCATGCACAAGTTCTTGTTTATTAAGTTATTTATTTAATTTGTATTAGTATTGGCTACATTATCATATAACAATAGCTAACTCTCG AGACATGTAATTTTTTTGTTATTTGTTTTTAATAGACACCTCTTGTTTTTGGCAGCAGGATGCGTTAATTAGTATTGTTTATATGATGACCGTTCTTGAA TGTTTACTTTTAGCATTTTCAAATCCTTGCTAATTCTTCTGGATGTGACAGCGGGCAGATGCATCAACGGTGTGGAAAGAATTCACTTCTTCAGATGGGA AAAAGTATTATTACAACAAGATTACTCAGCAATCAACATGGTCAATACCAGAGGATCTTAAGTTGGCTCGTGAACAGGCACAGAAAGCTGTGAACCAGGG AGTCCAGTCAGAAACAACTGATGCATCCAATGCTGTTGTCTCCTCTAATGCAACATCAACAGATGCTAATGTAGCTATTTCCAACACTTCTTTGACATCA AATGGGATTGCTTCAAGCCCTGCTTCTCTCCCACCTATCGGAGCCGCTGATCCGCAACATTTGATTTCTGGATCAGGGACCCCTGTTTCCCACTCTATCG TTACTCCTGGATCCACTGGAGTTGAACAAAGTACCATGACAATCACTGAATCTATAACAGTTGCAGGAAGCTCAGGAGCAGCTACCGATTCACTCGATTC CAAAGTGCCATCCATTGTTGAAAATCAAGCATCTCAAAATTTTGCTACTTCCATCACTGGAGCTTCTCTTCAAGATATTGAGGAATCCAAAAGAGGAGTG ACAGGGGTTGGAAAAGTTAATGTGACTCCACCTGAGGAGAAGGCCAATGATGATGAAACTTTGGTCTATGCGAATAAGCTGGAAGCAAAAACTGCATTTA AAGGGCTTTTGGAATCTGCGAATGTTCATTCTGATTGGACATGGGAACAGGCAATGAGAGAAATCATCAATGACAAAAGATATAATGCGCTAAAAACACC TGGTGAACGAAAACAAGCTTTTAATGAGTACTTGGGCCAAAGGAAGAAGATAGAGGCTGAAGAGAGGCGCATGAAGCAGAAAAGAGCTCGAGAAGAATTC ACTAAGATGTTGGAAGAATGCAAAGAACTTACATCATCCATAAGGTGGAGCAAAGCTATAAGTATGTTTGAAAATGATGAGCGATTCAACGCTGTTGACA AACAAAGAGACCGGGAAGATTTATTTGAAAGCTACATGGTGGAACTTGAGAGAAAGGAAAAGGAAATTGCTGCAGAGGAACACAGGCAGAATATAGCGGA ATACAGGAAATTCTTAGAGTCCTGTGATTATGTGAAGGTGTATAGTCAGTGGCGGAAAGTCCAAGATCGGTTAGAGGATGATGATAGATACTTGAGACTT GAAAAAATTGATCGCTTGCTTGTTTTCCAGGACTATGTACGTGACTTGGAGAAGGAAGAAGAGGAGAAAAAAAGAATACAGAAGGACCGAGTCTATCGGG GCGAAAGGAAAAACCGTGATGCATTTTGCAAGTTGCTGGAAGAACATGTTGCTGCTGGAATTCTTACTGCTAAAACTCAATGGAGAGACTATTGTTTGAA GGTCAGGGATTTGCCTCAATACCAAGCTGTTGCGTCAAATACATCTGGTTCCACTCCAAAAGAAATATTTGAGGACGTTGCTGTAGAACTTGAAAACCAG TATCACGAAGACAAGACACTCGTAAAAGATATAATCAAGACGAGCAAGGTTACTGTAGTGTCTACATCAGTGTTTGAGGACTTTAAGTCTGCTGTCTCGG AAGAAGGTTGCAAAACAATATCTGACATCAATTTGAAGCTTGTATACGAAGAATTGCTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACG CCAACGCCTTGCTGATGATTTCACTAGCTTGTTATATACATTTAAGGATATTACTACTTCTTCACAATGGGAGGATTGCAAGCCACTCTTTGAAGAGACA CAAGAGTACAGGTCCATTGGGGATGAAAGCTACAGTAGAGAAATTTTTGAACAGTACATTACGTACTTGGAGGAAAAAGCTAAAGAGAAGGAACGCAAGC GTGAAGATGAAAAGGCTAAAAAGGAGAAAGAAAAAGAAGAGAAAGAAAAACGGAAGGAGAAGGATAGAGAACGTGAGAAAGAAAAGTCTAAGGAAAGACA TAAGAAGGTTGACACAGATAGTGAAAATCAGGAAATAAATGACAGCCATGATTACAAGGAGGAGAAGAAAAAAGAAAAGGATAAGGAAAGGAAACATCGG AAGAGGCGCCAGAGCAGCATAGAGGATGTTGATTCTGAAAGGGATGAAAAGGAAGAGTCCAAGAAATCACGAAGACATGGCAGTGACCGCAAGAAGTCTA GGAAGCATGCGAACTCTGAATCAGATAACGAAAGTAGGCATAGAAGACACAAGAAGGAGCACCGGGATGGTTCCAGAAAAACTGGGGGCCATGTGGAGCT TGAAGACGGGGAGCTCGGTGATGATGGTGATATTTAATTGTTCGTTGTAGTGGTGAGATAAAGAACTTAAACTGCATCTTTTGAAGAATATTATTGAGTT CAATTGTCATTGTCAAATACACTTTAGGTCTTGTTATTCCTCTTTTCAGGAAACATCTGACTTAGGATCTTGAAGTGCAAAACGAGTTTTAGAGTACTAA TTTTAATTTTACACCAGCCACTTTTGTTTAGATGTTCATCTTTTGCTGATTATATAGCAGATAAATTTGGAATCCTATGGATAGACTTACTTCTTTTAAT AACGTTATTATTAGTAGAACATTGTATTTTATATGAATTCAGCATCTGAAGTCATTTCATTCTTCCTCGTCTTTCCTGATGCTGACATGGAAAAACCG
• Tissue: pods
• Gene name: LI_gene_163653;
• Additional information: details;

Expression of Ll_transcript_421649

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.3
• PS2: 0.5
• PS3: 0
• PW1: 0.1
• PW2: 0
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421649

• Blastp: Pre-mRNA-processing protein 40A from Arabidopsis with 60.13% of identity
• Blastx: Pre-mRNA-processing protein 40A from Arabidopsis with 59.25% of identity
• Eggnog: PRP40 pre-mRNA processing factor 40 homolog(COG5104)
• Kegg: Link to kegg annotations (AT1G44910)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436968.1)
• Pfam: FF domain (PF01846.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;