| Id Trinity | TRINITY_DN48747_c2_g1_i5 |
|---|---|
| Name Transcript | Ll_transcript_419397 |
| Sequence | ATAAATTACCATTGTTAAACTTCACCCTCTTCAATTAATTTGTTTCACCATAATATTCCATCTCTCTCTTCTCCATACACATCTCGCTCTACCTTCTACA AAGAGCCACACAGTTATTTGTTCAACGCGCTAAAATACACAACTACACATAAAATAATGCACATAATGATTCTCACGTTCCTCATTCTTGGGACCCTTTT CTTGGATCCAGCTCCTCCTTCTCTCTCCTCACTGTAAAAAACAACCAATTCTTAACAAAAAATCATTTCTTTATCGTTTTTTTTATATCCCAAGAAAAAA AATCCCTTTTTTTCTCTTCCTTTTTCCATTAGAAGCCAAGCCATGACCGAAGTGCTTCATTCCCCAGCATCCCATTTTTCTTCTTCCTCCTCCGATGGCA TTCTCTCTCCTCCTCCTCCTCCACCTCCTTCTGTAGTGGTGGAAGGTTTTTCTACGGTCACTGACTGTGACAGAGTGGAAGTAACAGACAACAATGAGAA GGGGTCAGGGGAAGAAGAAGAGGTGTCCCTTTTGGCCATTCTTGTGACCCTTTTCAGGAAATCATTGATTGCTTGTAACAGTATTGATAGGAGTGAGCTC TGTGCTATGGAGATTGGATGGCCCACTAACGTGCGCCATGTTGCGCATGTTACCTTTGATAGATTCAATGGCTTCTTGGGTTTGCCTGTTGAGTTTGAAC CTGAAGTCCCTAGAAGACCTCCTAGTGCCAGTGCTACTGTTTTTGGAGTTTCAACAGAATCCATGCAATTATCATATGACACAAGAGGGAACAGTGTGCC AACAATTCTGTTACTAATGCAAAGGCGCTTGTATGCCCAAGGAGGGTTACAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCATGATGAATAT ATTAGGGAACAATTAAATAGGGGATTGGTCCCAAATAACATTGATGTACATTCTTTGGCTGGACTTATTAAGGTATAACAATGAAAGGATACATGTTCCA TGCTACAAAATACTATTTGTGGCTACTGTTTATTCTTGTAACTAAGTACTCATACTCATTTTACACTATATATGTTAATTTAAGTTGATATACTTGTACT TTTTCAAGGCTTGGTTTAGGGAACTCCCTACCGGTGTTCTGGATTCTTTATCGCCAGAGCATGTAATGCAATGCCAGACTGAAGAGAATTGTGCTGAACT AGCGAGGCAACTGCCTCACACTGAAGCTTCCCTCTTGGACTGGGCTATCAATTTGATGGCTGATGTTGTCCAACACGAACATCTGAATAAGATGAATGCA CGCAACATCGCTATGGTTTTTGCACCAAACATGACTCGGATGGCAGACCCTATGACGGCATTGATGTATGCAGTTCAAGTGATGAACTTTTTGAAGACAC TTATATTAAGAACACTGCGACAACGAAAGGATTCTGTGGTAGAACCATCTCCTGGATTTTGTTCAGAGCCTTTTGATGACAATGAGGACCATAGTGACCT TTTTTACTCCTTCCAACAAGATGCAGCCACAGAAAATGAAGAGGCTGGGGAAACCTTTGTTTCTGAGAAAGCTGTATCAGAATGTTCCCCTGAATCCCTC CAAAACATAAATTCAACTGAAGCAGAGTGTGGCAGTTTGGTGAGCTCCTATGAGGATCTACTCTGGAATGAAGATTTGCATAGCGAGTTTCCACCGAAAG GAAAAGTTGAGAAAAGTAAGACTGGCCAACCAGGTAGTTCAAGTACTATAAAGGGATTACCGAAAACCAAAGTGCAGCAACCTGTAATACATGGAACAAT GGCTGTTGAAAAGGGTATTAGCAATCTGAGCCTCATAGATTCAAGATCAGAGCGGATAGAAGCCTGGCGGTGAAAGAAGCACCTTTGTGCTGGATTGAAA ATTGATTCTGACATTGTGGCAATGTAATTGTAAGTTTTTTGCTTCTGAAGTGTTGCAACTTGCAAGGACAAGTTTCTGAAGTGGTTCAGTTTTTTCCCTT TATTTCCTTAGTTTGTTTAACTTGTCTGATTTCAAGAATGGCACAGTGATTACACTAACTTTGTATTGAAATCTCATTTACCATGTGTGGTTTACCTCTG TGTTCTAATAGTTATTCAAGAATGATCATTCTTCTGTCACTGTTACATTGTTCAAATTAATCACTTCTAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_163673; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_419397
| Blastp | Rho GTPase-activating protein 1 from Arabidopsis with 48.51% of identity |
|---|---|
| Blastx | Rho GTPase-activating protein 1 from Arabidopsis with 78.95% of identity |
| Eggnog | rho GTPase activating protein(ENOG410XRR2) |
| Kegg | Link to kegg annotations (AT5G22400) |
| CantataDB | Link to cantataDB annotations (CNT0000052) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019449622.1) |
| Pfam | RhoGAP domain (PF00620.26) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |