Ll_transcript_419388

• Id Trinity: TRINITY_DN48747_c2_g2_i1
• Name Transcript: Ll_transcript_419388
• Sequence: TGACAACCACTTCACTAATCTGGAGTCGGCATTGGTTGCTCTTGGCTGCAAAGAGTGCATTCTGCCTATGACAAATCTGTCAAAAACAGAGTGTTGCGTG ATACATTGACTGAATGTCGTGTGATGTTAACTGAGAGGAAGGAAACTGAGTTCAGAATAACGGATCTAGCACAGGATCTTGGTAGTTTTGTTAAAGGTTC TCCTGAACCAGTATGAGATTTAGGGGGTGGATTTGAATTTGCACCAAACATGACTCAGATGGCAGACCCTCTCACTGCACTGGTGTATGTAGTTCAAGTG ATGAACTTCTTGAAGACATTTATAACAAGAACATTGGAGGAAAGAATAAAACAAGGTGCTGCTGCAGAAAGTGGAGAGGCTGAGGAACACATAGTTGCTA AGGAAACTGCCTTAGATAATAACTCCTCAATTGGAGGAGAAAGTAAGAGTCTGAAAAACTCTTCTGAGAATCTAATATGCGATGGTGATTTGTACTGAAA TATGTTACTAATTTAGCCTTTTTGTTTGTTTCATAGTTTGGTCTATCAATTCGAACGTGACATGGTAGAAGTGAGATTGAAGAAAGCTTTCAGTCCAAGA GTGTGGATTTTTGGTTAGGGAAAACTGTGCATTTTGAGAGGATAGTGATAAGTTGTGATGGTTATTTTTTTGCTAATATGAGAATGATGCTTGGTTTGTG CTTGTTTATATAAACCTTGGGACAATTTACTTGTTGGCTGTTGAGAATTGAGATGGTGACGCATTTTGTGAATTCATCATTTGTAGGACATTTTTGGAAT GTTTCAATGTAGGTGCATCTAGAATTAGCTAGGGATTCTCAGAATGATTATCATATGATACTCTTAATCAATAAAAAAAAGATGGTGATATTATGTTTCC ATTAATTAAAAAAATTCAATTCAAT
• Tissue: pods
• Gene name: LI_gene_163674;
• Additional information: -

Expression of Ll_transcript_419388

FPKM

• PAB: 2
• PNAB: 1.2
• PS1: 1.3
• PS2: 0.4
• PS3: 0.6
• PW1: 1.7
• PW2: 0.3
• PW3: 2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_419388

• Blastp: -
• Blastx: DNA mismatch repair protein MSH2 from Arabidopsis with 50.88% of identity
• Eggnog: that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity)(COG0249)
• Kegg: Link to kegg annotations (AT3G18524)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_003549805.1)
• Pfam: -
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;