| Id Trinity | TRINITY_DN48749_c1_g1_i22 |
|---|---|
| Name Transcript | Ll_transcript_421509 |
| Sequence | CTAGTATTCAATTTTGACTTCATCCTTCGCAAATGAAACTAATTGGGATAACTATCGCGACTCGATTTTCGGTTGAACATCGGAAACACCACTGATAGAA GTATAGGTAAGGTATGCTAAAAGCAGTTGGTGGCTTTCCCCGTCTCCCATCTCTCACTTTCGCCAAATATATGCTATCCAAACCAACCCAATTATACAAC ATGACCTCTTCTTCTGTGCCATCGCTCACATATCCAAAATTCGTTTCCGTAGAAGGCGCCGATATACACTCCCGAACTAAACCAGATGGCTTCAGATTCA CTCTCGTCTCTTATAACATTTTGGCTCAGGCTTATGTGAAGAGCTGTTTGTTCCCGCACTCTCCTTCTCCGTCTCTTAAGTAAACTTTATTTGCATCATC ATGTTTCAAATTAATTAATCATTACCAGAAATATGCATCACTAACTTCATTTTAACATCACTGGTTTTGTTCACTGAAGGTGGAAATTTCGTTCAAATGC TGTTTTACAAGTTCTCAGCAACTTGGCAGCTGATTTTTTCTGCCTACAGGAAGTTGATGAGTTTGATAGCTTTTACAAAGGAAAAATGGAGGAGCTAGGA TATTCTTCTATTTATATGAAGAGAAGTGGACAGAGAAAACGTGATGGCTGTGGTTTATTTTACAAGCATGACCGGTATGTTGGACTTCTGTGCAAAAATC AAACAATTTTTCGGTTTTGTGGATATCGTTTTATAATGTAAATTTGCTCGGAGTTACATGATCAATATAATTAGTCACTGACTAGGGATTTGAATTTGGA CCTAGATATAAGATTTCTATTGGAGCAAGAGAAAACTAGGATTTTAACTTAAGACTTGCAATCCCATGGCTTCTTATTTAATATTTTTCCGATGTAAATG TTGGTTAATAAACATAAGGATATATTCAAAAGTCCCAATGTAATTATGTGGGAATTGAAACCAGCAATAATGGCACTTTTGCTTGCTATTGGTCAATTAG TATTCAAACCAACTATGATTCTCTAGTTCTCTTTATATTTCTTTGCTCTTGCCTTTCCCATCGCATATTGGGATTATTTCTTGTTATGTTTTTATGCTTC CTCAAAACTATGGAATAGATCTGGTTAAAACTTCATGGATGATCTTTTGGTCTATAATAATGTCAATGTTCAATAATCTTAATCTGCATTTATACTTTTT GCTATTTAGTGCTGAGTTGGTCTTAGAGGATAAAATAGAATACAATGATCTTGTAAAGTCAATTCAAGACGAGAACTCTCCAAATGATGATGAAAACAGC AATATCCAGACAGTCCGGCCTGATAAACAAAAGGATGTTGCATCCAAAAGTGGTAAGTGCAAATTAAAACCAAACAATTCCTTTTGATTTTGCCACATCT TGAACATGATAGTACTTTGATATTGTTATAGACTTGCAAATAAACGGGTGGAACCAAAACTTTCTTTCTGCTACTTCATTTCTATTGTATATATATATAT ATATATAGTGATGAAATTAAAACCTTCGAATCCTCTACCCCATTTTCCCTTTGCTTAGTTCATCAGAAATGAGATACAATATTTTCAAAACACCATACTT TATATTTCTTCTTTTATTATTAGTAAAAACAGTTAAGATTCAATGTCGATATGTGCCATACCAAGCTTCTGAATTAGTTTCAGATGGAGTTGAATCTAAC AAAACTTCTTCTAATTACTTAGTTCTGAAAGAAATAGATGAAGCCTTTGAGGAGCAGTGCAAGCAAATGTATGGTTTTCTGCCATGTACAAATAGCATTT TTGGTGATCTATTTCTTATTTTGGTGTATGAATATTTGCTGTTTCATGGAGAATCATATTTGGCTAGAGGAGGTGAGCAAATATTCAAGATTCTTGGCCC TGGTATCTTTGGTGCTAGTGCTTTTCATATCATTGGTGCACTTCCTGAGTCCTTAATTCTTCTTGTTTCTGGACTTTTAAGCAATGGAGAAGTGGCACAG GAATATGCTTTCACTGGAGTTGGCTTATTAGCTGGTTCATCTATTATGCTTCTCACACTAGTTTGGGGAAGCTGTGTTATTGCAGGAAAGCAAGAATTTC AGCATCAATCAAGGTCTAGAATCTATCAAGGTTCAAGTTCAGCACAAAAAAGTATCAAAACATTATTCAATGGTTGTGGAATTACTACTGATTTAGAGAC CAGCTATACTGCTAGAATCATGGTCTTATCTGCCATACCACTAGTAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGAGGAAAGAAGTGTGACT TTAGTAATTGCTATCATCATTACTACCATTCTTCTATTACTATACTTCATTTACCAGTTGTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGA GACATGATCACTTAATACTAAGAATAATAAATGATGTTGAACAGAACACCCTGCAAAGGATTCTCACCAAGCATGGTGCTCCAAATCTAAGTGCTATAAG AAGGCTATATAAAGAAATAGATCAAGATGGAAGCAGTGGCATATCAGCTTCTGAACTAAAAGATTTGTTGCTTAAAAACAAAGTAAATGAAACAAATATT GATGAGCAGAAAGAAGTAGAAGAGGTGTTACAAATTTTTGATAGGAATAATGACCAAAAAATAACTAAGGAAGAATTTGTGAGTGGCTTTGCAAAATGGC TTGATCAAACAAAGCATGCTTTAGCCAAACAGTATTTTTCAAGGAAATCACTCAAGGAGGTATATCAGGTTTTTGGACCATGGATTGAAAACAAAAGAAA AGAACAAGAGGGGAAGAAACAACTTATAACTGAAATCTTAAGACATGTTCAGAGTGATATGGTTGGCAACCTTCTCACACCAGATGGCAAACCTGATGAA CAAGCCCTCAAAGGGTTGTTTGAGAAAATTGATCGAAATCGAGATAGCTGCATTTCCGAATCTGAGTTGAAGGAACTAATCATGAACATCAAGTTTGTCA AAGTATCAATGGAGGTGGAGGATGCAGTTGCTTTAGTCATTGAAGAACTTGACTTTAACAGAGACCAGATAATTAATGAGGAGGAATTTGTTGATGGCTT TCAGAAATGGCTTGGCTCAACTTCAAGTCCTGCTCCTGTGTCAAATTCTGAGTCTCTACAAGATATATATCAAGTAAGTATATGCACAATTCCCTTTGTC CAAACACAACCATCAAAACACTCTTAGATATGTAAAACCACTTACTTAAATTACATAAAAAATCTCGTAGAATTACTCCTTAACATGGTATCAAAGTCTG TATGACTGAATAGTATAGAGTTATGTCCTTGCAACACTTGTTCTCCTAATATTAAACATCGAATTTCAGCGCGAGTTATATTTTTCGGGAAGTTTCTTAA CATGGAGTATACAGCTTTTCTCATTGTGGAATCCTCCAAAAGAAGTAAGTAATGTCAATTTATAACACTTACAATCTTTCTTGTGCATAAGGCATGGGAA GAGGCTAGCATGGTGGTGGAAGAGAAGCAAATCAAAGCAGTAGTTGATAAATCAATATGGGCATGGTTGAAGGCTATAATGTATGTGGTTCTAGGAATTG CTATGCTATCCATTCTAGCTGAGCCTCTGATAGAAAGTGTCAAGAATTTCTCAAACAATGCAGGATTTCATCCATTCTTCATCTCCTTTATTCTAATCCC CCTTGCCATAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGTGAGCCATAAGAAGCCAAGAACTACTTCTCTTGCCATTTCTGAGATCTATGGAGGG GTGTTCATGAATAACATTCTTGGCTTCTTTGCAATATCAATTCTGATCTATGTAAGAAAAGTGACATGGGAATTCTCAGCTGAATTATTGGTAGTTGCAA TTGTTTGTGCAACAGTAGGCCTTATTGCAGGATTTCAGTCCATTTTTCCTCTATGGTCTTTCTTTTGTGCATACCTTTTGTATCCATTGTCTCTTCTTCT GGTTTTTGTACTTGATAATGTTCTCAATTATACTTAACACCACTGAGAGCTATGTTGAGACTGCTCAAAGGAATAAGAAATTATTCAGAATTTGTTTACT AAGTTTTTTAAAGCTAAAAGGAAAGAAAAGGTACAAAGAGAAACAAAAG BLAST |
| Tissue | pods |
| Gene name | LI_gene_163692; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_421509
| Blastp | Sodium/calcium exchanger NCL2 from Oryza sativa with 39.2% of identity |
|---|---|
| Blastx | Sodium/calcium exchanger NCL2 from Oryza sativa with 39.2% of identity |
| Eggnog | Calcium-binding EF hand family protein(ENOG410ZVKW) |
| Kegg | Link to kegg annotations (4328874) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019443894.1) |
| Pfam | EF-hand domain pair (PF13499.5) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |