Ll_transcript_421473

• Id Trinity: TRINITY_DN48749_c1_g1_i5
• Name Transcript: Ll_transcript_421473
• Sequence: CTAGTATTCAATTTTGACTTCATCCTTCGCAAATGAAACTAATTGGGATAACTATCGCGACTCGATTTTCGGTTGAACATCGGAAACACCACTGATAGAA GTATAGGTAAGGTATGCTAAAAGCAGTTGGTGGCTTTCCCCGTCTCCCATCTCTCACTTTCGCCAAATATATGCTATCCAAACCAACCCAATTATACAAC ATGACCTCTTCTTCTGTGCCATCGCTCACATATCCAAAATTCGTTTCCGTAGAAGGCGCCGATATACACTCCCGAACTAAACCAGATGGCTTCAGATTCA CTCTCGTCTCTTATAACATTTTGGCTCAGGCTTATGTGAAGAGCTGTTTGTTCCCGCACTCTCCTTCTCCGTCTCTTAAGTGGAAATTTCGTTCAAATGC TGTTTTACAAGTTCTCAGCAACTTGGCAGCTGATTTTTTCTGCCTACAGGAAGTTGATGAGTTTGATAGCTTTTACAAAGGAAAAATGGAGGAGCTAGGA TATTCTTCTATTTATATGAAGAGAAGTGGACAGAGAAAACGTGATGGCTGTGGTTTATTTTACAAGCATGACCGTGCTGAGTTGGTCTTAGAGGATAAAA TAGAATACAATGATCTTGTAAAGTCAATTCAAGACGAGAACTCTCCAAATGATGATGAAAACAGCAATATCCAGACAGTCCGGCCTGATAAACAAAAGGA TGTTGCATCCAAAAGTGGTAAGTGCAAATTAAAACCAAACAATTCCTTTTGATTTTGCCACATCTTGAACATGATAGTACTTTGATATTGTTATAGACTT GCAAATAAACGGGTGGAACCAAAACTTTCTTTCTGCTACTTCATTTCTATTGTATATATATATATATATATAGTGATGAAATTAAAACCTTCGAATCCTC TACCCCATTTTCCCTTTGCTTAGTTCATCAGAAATGAGATACAATATTTTCAAAACACCATACTTTATATTTCTTCTTTTATTATTAGTAAAAACAGTTA AGATTCAATGTCGATATGTGCCATACCAAGCTTCTGAATTAGTTTCAGATGGAGTTGAATCTAACAAAACTTCTTCTAATTACTTAGTTCTGAAAGAAAT AGATGAAGCCTTTGAGGAGCAGTGCAAGCAAATGTATGGTTTTCTGCCATGTACAAATAGCATTTTTGGTGATCTATTTCTTATTTTGGTGTATGAATAT TTGCTGTTTCATGGAGAATCATATTTGGCTAGAGGAGGTGAGCAAATATTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCATATCATTG GTGCACTTCCTGAGTCCTTAATTCTTCTTGTTTCTGGACTTTTAAGCAATGGAGAAGTGGCACAGGAATATGCTTTCACTGGAGTTGGCTTATTAGCTGG TTCATCTATTATGCTTCTCACACTAGTTTGGGGAAGCTGTGTTATTGCAGGAAAGCAAGAATTTCAGCATCAATCAAGGTCTAGAATCTATCAAGGTTCA AGTTCAGCACAAAAAAGTATCAAAACATTATTCAATGGTTGTGGAATTACTACTGATTTAGAGACCAGCTATACTGCTAGAATCATGGTCTTATCTGCCA TACCACTAGTAATCATGCAAATCCCAAATTTATTCCAATTCTCTTCTGAGGAAAGAAGTGTGACTTTAGTAATTGCTATCATCATTACTACCATTCTTCT ATTACTATACTTCATTTACCAGTTGTTTGAACCTTGGGTACAGAAAAGAAGACTAGAATATGTGAGACATGATCACTTAATACTAAGAATAATAAATGAT GTTGAACAGAACACCCTGCAAAGGATTCTCACCAAGCATGGTGCTCCAAATCTAAGTGCTATAAGAAGGCTATATAAAGAAATAGATCAAGATGGAAGCA GTGGCATATCAGCTTCTGAACTAAAAGATTTGTTGCTTAAAAACAAAGTAAATGAAACAAATATTGATGAGCAGAAAGAAGTAGAAGAGGTGTTACAAAT TTTTGATAGGAATAATGACCAAAAAATAACTAAGGAAGAATTTGTGAGTGGCTTTGCAAAATGGCTTGATCAAACAAAGCATGCTTTAGCCAAACAGTAT TTTTCAAGGAAATCACTCAAGGAGGTATATCAGGTTTTTGGACCATGGATTGAAAACAAAAGAAAAGAACAAGAGGGGAAGAAACAACTTATAACTGAAA TCTTAAGACATGTTCAGAGTGATATGGTTGGCAACCTTCTCACACCAGATGGCAAACCTGATGAACAAGCCCTCAAAGGGTTGTTTGAGAAAATTGATCG AAATCGAGATAGCTGCATTTCCGAATCTGAGTTGAAGGAACTAATCATGAACATCAAGTTTGTCAAAGTATCAATGGAGGTGGAGGATGCAGTTGCTTTA GTCATTGAAGAACTTGACTTTAACAGAGACCAGATAATTAATGAGGAGGAATTTGTTGATGGCTTTCAGAAATGGCTTGGCTCAACTTCAAGTCCTGCTC CTGTGTCAAATTCTGAGTCTCTACAAGATATATATCAAGCATGGGAAGAGGCTAGCATGGTGGTGGAAGAGAAGCAAATCAAAGCAGTAGTTGATAAATC AATATGGGCATGGTTGAAGGCTATAATGTATGTGGTTCTAGGAATTGCTATGCTATCCATTCTAGCTGAGCCTCTGATAGAAAGTGTCAAGAATTTCTCA AACAATGCAGGATTTCATCCATTCTTCATCTCCTTTATTCTAATCCCCCTTGCCATAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGTGAGCCATA AGAAGCCAAGAACTACTTCTCTTGCCATTTCTGAGATCTATGGAGGGGTGTTCATGAATAACATTCTTGGCTTCTTTGCAATATCAATTCTGATCTATGT AAGAAAAGTGACATGGGAATTCTCAGCTGAATTATTGGTAGTTGCAATTGTTTGTGCAACAGTAGGCCTTATTGCAGGATTTCAGTCCATTTTTCCTCTA TGGTCTTTCTTTTGTGCATACCTTTTGTATCCATTGTCTCTTCTTCTGGTTTTTGTACTTGATAATGTTCTCAATTATACTTAACACCACTGAGAGCTAT GTTGAGACTGCTCAAAGGAATAAGAAATTATTCAGAATTTGTTTACTAAGTTTTTTAAAGCTAAAAGGAAAGAAAAGGTACAAAGAGAAACAAAAG
• Tissue: pods
• Gene name: LI_gene_163692;
• Additional information: details;

Expression of Ll_transcript_421473

FPKM

• PAB: 1.2
• PNAB: 0
• PS1: 0
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421473

• Blastp: Sodium/calcium exchanger NCL2 from Oryza sativa with 39.2% of identity
• Blastx: Sodium/calcium exchanger NCL2 from Oryza sativa with 39.2% of identity
• Eggnog: Calcium-binding EF hand family protein(ENOG410ZVKW)
• Kegg: Link to kegg annotations (4328874)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019443894.1)
• Pfam: EF-hand domain pair (PF13499.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;