| Id Trinity | TRINITY_DN48775_c1_g1_i9 |
|---|---|
| Name Transcript | Ll_transcript_420352 |
| Sequence | CTCAAAGAAAATACACTCAACGACAACTCACATTATCCTATCCTAATTCACCCAAGCTTATCATCAATCAAAAAGAAAAACAATACTACATTCTGAGAAG ACCATTGTTCTTCATTCATTTTCCATGGCTTGCGGCCTACATTCCCCCATGGTCTCCTTTTTCCCCCACCCATAACAATAAACACATTTCACATATTCAA CACAACCCTCACCACAATTCACAATAAACATCTTCACATATTCATCACCAAACATTCACATGTCACCACCTTCACATATTCATCATCGCATCTTCACTCT TGCTACAGAGCTTGCCACCGCACCTCTTCCACCTCCAATGGTGCCACCATCGTGAATGGTCGTGGTGGAGAGTAGGGACGAAGCCGTCACCTGAGCTCCA CGCCCCATCAGCCTTGGGTTGTCGCTCCGCTCCGGGTTGGCCATCAGCGGGTGACCCGAACCAAGCGGGTGTGAGTGTGGAGAATGCGGAATCACATAAT GGAAACCTTATAAAACATGTTAATTCAGCTGTCTTCCTTGTGGACACATATATGGTATGTCTTGCATCAAAAAATGGCTTCAGCAGCGAAAAAAGCACGG CAAGTGTCCTCAATGCAATAGGAAATGTTCCTTGAAGGATGTGAGGAAACTCTATGCTTCACGATTAGTTGCTGTTGATGAAGAATCTCAGAAGAGGATT CAATCACTTGAGGCCAAATGTGCAGCCCTTGAAAGTAAGGGTGATGATTGGCGCAAGAAAGAAGCTGGATGGCAGAAGAGAAAAGCTGCATTACATCTTC AAGTTCAGAAGCTTGCAGAGAAAAACATTTATTTGGAGCAGCTGCTATTAGATATGCAGAGCAGGCAATCTGGAATTAGGAACAACGGCTCAAGCTTCTA TGGAAAGGGATCCTTCTGCAATTTCGAATTGCAGAAAACATTTCAACTGAGTGGTGCACGGGTATTTGATATGGACACATCGAAGCAAATTATATTAGTT GCACAAAAGCCAAAGGTGATAGGTGGAATGCACTCACTAACTAAAGTAAGATTTTTCAACTTTTAAATATTTGTGTGTATATGCTGACTTTGGCTTTAGT GTCTCTTTATGCAACGGAAGTTTTCTCTTTATGTTGACCTGGTTTTGTAGGTAAGCTTGATAGCTCCATTTGAGACAGAAGATATCTTACTGCCTTCCAC TATAAATGGTATTAGAGATGTACATATTTCACCTTCTAATGGTAGCCTGGCCCTCTATGCTTCAGTAGGAAAGAAATTATCAGTGCTAAGCATGGAGAGC AACAATCCTGTTGTAAATTATGATCTACAGTGTCCTGCTTGGTCATGTTCATGGGATCTCAACAGTTCACATTACTTATATGCTGGACTACAGAATGGTT GTGTCTCTGTGTTTGATATGCGCCAAACTGCAGGACCTGTAAAATCTTTATTTGGGTTGACTAGCAACCCTGTTCATACTTTAAAACCACTTGCACAAAC TTCAAGTCTTTCATCTGGTGGTAGGACCATCCTATCCGCAGCTGCCATTGGAGTTTCTCAGTGGAACTTTGATTCTGAAGAAGGGCCGTCTCTTGTTCCT AATACTGTTAGTCAAGGAGTTTGTATATCCCTTGCCTATTGCCCTAGCAGTGATGACGTTGTTGTTTCATATCGTCCAAAAGTTGACACGTCAATGGAAG TGCCTCTTTCTCAACAATTGCTCAGTCCTCTAGGTACTGGACAAGGAGTACAGGGCTCTCATGTATTGTTCAAGAGAGATGATAGTCACAATTTCCAAAT GATGGGTTCCTCATGCGCCAATGTAAGTAAAATTAGACTACCAAAATGTGTGATTATAGAGTTAGGGGATCAGAGAAGATTGTTTGCTTGTGGAGATGAA GTTACCGGTGAACTGGTCTTGCATGAGTTGCCATCTTTTAGAGTGCTTCAGCAATTCAAATTACCTGCTCACGCCCGTGATATCAAGTACTCACCTAGCC ATGGAATACTTGGTTGTTTAAGTGAGAACACATTGCAGCTTTTCCATTCCAAGTGAGGAAGGTATTGCTATATCTTACAATTGCTATGTCACTGCAATTA TTTGTGTTAGGATTTCAAATGCTATTTGCTTTGCTATATCACTGGAATCTTTCAAGGGGGTCACTTAGCGTATGCAGGTTGTGTTCGTTTCCTGTATTTA AGGGACATTCCTTCTTAATTTTTTGCATTATAGCTGTAATATTGTCTGATATTCGGTGACACTAGTAGGGAATGCTTGGTAGTTTGGTATGAAGGTCAAC AAGAGCTTCATTATTTGTACATCTGATAATGTATTTTTATTCTTGACAAAGTTGTTTATTGTTTTATTTTTTCTCTTCCATTCCATTTTCTCGTAGAAAA TGTTCCAAGTACCTGTGGCAAACGTATGTCTATGTTTGATGTTTAATTTTTTTCCCCGTAAGATTGAATTATGGATATTTGGAAACTACCCACATTCAAG GCTGTATAGGGTAAGTGAATTATGTTACTGTACCATATAAGATTGTATTGTTTTTGGGAACAAAAAGTTGCATCAGTCATTACATTTATTTTCATCAAAT GATGAATAAGAAAGCTTTCTTTATTTATCCAAATTAAGAAAGTTGTATTTGTTTTTCAGCGCTTAGTGGTGGATATAATGATTAATGCCCTTTGCATAAA CGAAGCCCAAAGGAAGTTGAGTTTCTTGTCCCTACTTATGCATCATCCATCAGTGCTGGAAGGCTAACGTCTTCTTTGTTGCAAGTCGAGGACTCATCCT CCAACCAAAAACACTGTTAACAACCGGTACCATGATTTTTTTAAGCAATATCATATTTAAAATTAAATGGTTTAGTTAGGTTAATAAGGAGTAAAACATG GGTTAATGATGTTAGATTGATTACATAATTATCCAAGTTAAATAAGCTGACATAGAGATTTTTGTTTGATAGCCATGCCCATTGTACCATTTTTTAATAG TAATAGCAAAATGGGCTCTCAAGCTTGTTTGCTGTACCTATAGCAGGTTTTTTTTTGTTGGATGATTTTTCATCCATTTTAAAATAGGCTAACGGATCAC TCAT BLAST |
| Tissue | pods |
| Gene name | LI_gene_163890; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_420352
| Blastp | E3 ubiquitin-protein ligase RFWD3 from Homo with 32.84% of identity |
|---|---|
| Blastx | E3 ubiquitin-protein ligase RFWD3 from Mus with 23.8% of identity |
| Eggnog | ring finger and WD repeat domain 3(ENOG410XPPE) |
| Kegg | Link to kegg annotations (55159) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019424666.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |