Ll_transcript_421239

• Id Trinity: TRINITY_DN48778_c1_g3_i1
• Name Transcript: Ll_transcript_421239
• Sequence: GAAAAAAGGCAGCAAAACCTATCCAGTAGTATCTACTATCCACGCTGGCCTTGCACATCCTCTCAATGTCATTAGAAATAGACAGTATTTTTTTCTTCAA ACGGCCGATACGCTTTTCAGCGGACTTGGTAAATCAACCTTCATAACTCAACAGATGAGAGATCCAGTAACATGCGTGCTTGCACACTCTCTCCTATATT ATATTCCTAACCAATCAATCAGAATCACCAACAAAGGAATTTGTCAGCTTAGATTGTGAAATATGGGTGGCGATGGAAAGAAACACAAGTGGAAAATCTC CTTTCACCGTTCCTCTTCTAAATCCAAATTGGAACAAAAAACACCTCCCAAAGAATTCATATGCCCCATTTCCAAGTCATTAATGTCTGATCCGGTTGTC GTGTCTTCGGGTCAGACCTTCGAACGCGTCACCGTTGAAGTCTGCAGAAAATTAAACTTCACTCCAATTCTTGAAGACGGGTCCCGACCCGATTTCTCAA CCGTGATTCCCAATTTAGCCATCAAAACGACAATCCTCAATTGGTGCGACAAATCCCACACCGAGTACCCGCGCTTACCAGATTACGCCTCCGTTGAGAG CCTCGTCCGTGAACTAATGGCGCCGCAAGTGGAGCAGAAAATTAGGGTTTCGGAGGAGGAGCTTCTGAAAGGTGTGGCGGATAACCTGCCGGTGATTTTC TCACACGCCGCAACTGAATTTGGAACCCGAGTTAACCACTTCAACTCGGGATCCTCTGAGGAATCAGTAATCATAGGTGAGAGCCCCGGCACACCGTTAC CGTTCACAAGTCGCCCAAAGTGTTTCTCATCGTCTTCCTCCTCCTCAATTGAAATCAGGGACATCGAAATTCAAAGCCCTGGCGGTCCAATTTCTGAAGA AGAGGAATTGCTAGCGAAATTGAAGAGCAACGAGGTTTTCGAGCAAGAAGAAGGGGTGATATCACTAAGAAGCATCACGAGGAGCAGGGAAGAAGCTAGG GTTTCTCTTTGCACGCCGCGGTTGCTTTCGGCGTTGTTTTCGCTTATTCCATCGCGATACGCCGTCGTTCAGGTCAACGCAGTTGCTTCTCTGGTCAACC TTTCTCTCGAAAAGCGCAACAAGGTGAAAATCGTACGTGCAGGTTTCGTTCCATTAATCATCGATGCTTTAAAGGGTGGATCCTCTGAGACGCAGGAACA CGCTGCGGGCGCACTCTTCAGTTTAGCGTTAGATGATGGTAACAAAATGGCGATTGGTGTTCTTGGCGCGTTGCAGCCGCTAATGCACGCGCTCAGATCG GATTCCGAGCGGACTCGGCTCGACTCGGCACTCGCGTTGTACCATTTGACTTTACTCCAGAGCAACCGAGCCAAGCTTGTTAAACTCGGGGTTATCCCCA CGCTTCTTTCAATGGTGAAATGGAAAACAGGGGATATGGCAAGTCGGGTATTGTTAATTTTGTGTAACCTTGCAGTGTCTGTGGAGGGACGAACGGCAAT GCTGGACGCTGATGCGGTGGGGTGTTTGCTGGGGTTGTTGAGGGAGAACGAGTTTGATTCGGAGTCAACTCGGGAGAATTGTGTGGCGGCGTTGTATGCA TTGAGTCATCGGAGTTTGAGGTTTAAATGGCTGGCGAAGGAGGCGAGGGCGGTGGAGGTGTTGAAGGATATAGAGGAGTCGGGGACAGAGAGGGCGAAAG AAAAGGCGAGGAGTTTGTTGCTGATGATGAGGGCAGTCGGGGAAGAGGAAGAAGGGTCGGGGTGTGATAGAGCTTCGGAATCGGGCGGGTTGACTCGGAA TCAGTACCGAGTTGGTGGTTGGAGCAATGTCAACCCAACTTCATTTTAAGGTTTCACATTTTCATGCCTTATTTATATGATTTTGGTTCATTTGCAAGAA TTGGTGTTGATGAAATGCATAAGAAGTTGAAGAAAGGGAATTGAAGAGGTACATCTTGAACTGGTAGTTGCTAATTTATGGTTTTGCTGTGCAATTGTGG AATTGGGGTGTAAGTCATGGAGGTTGCCATTTTATACTTAATAGTAAACTTTTTACTCTTATTTATTTTAGCTTATATAGGGTGATTTAATCTGCAATCA AATTTTAGTTTAGTTGTGGTTAGTTAAGGTGTACATAATTATAATAAAACTTTGGTAATTGGCATACATGTAAAGAAAATATTGATGTGTCGTAAGTCAT AACCTCTGGGGATGCCTGCTTCATATTTGGGAATAAAATGGAGTGATGTTATGATTTTGATCCTTTGCATTTGATGTAAAATAAAATAATAAACAAATGC TTTATTTAAA
• Tissue: pods
• Gene name: LI_gene_163910;
• Additional information: details;

Expression of Ll_transcript_421239

FPKM

• PAB: 10
• PNAB: 3
• PS1: 6.8
• PS2: 3.8
• PS3: 4.7
• PW1: 5.8
• PW2: 6
• PW3: 5.2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_421239

• Blastp: U-box domain-containing protein 38 from Arabidopsis with 58.19% of identity
• Blastx: U-box domain-containing protein 38 from Arabidopsis with 56.74% of identity
• Eggnog: ubiquitin-protein ligase activity(ENOG4111IM2)
• Kegg: Link to kegg annotations (AT5G65200)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019430155.1)
• Pfam: U-box domain (PF04564.14)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;