| Id Trinity | TRINITY_DN48783_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_419650 |
| Sequence | AATTTTATGTTTTAGATATTTTTTTTGATTTTTTTTAACCTTAATAGTTTTGTTTTGTTGTCTCTCGTAGAAGTTTTTTTTTTTTTTTGAGTAAATCCGG GAAATCAATTGCTTAGGTGAAGTGTTAAGAGAAACAAGTAAGTGTTATTTGTGTTGTGTGGATGACTTGATGGGAAAGGTTCACTTTTAATGAATTTATA GTTTGTAGTTAAACGTGACCAATGCTTTTCAATTTTATGTGCTGAAAATTGCTTGAGGGGAAAATTTCAAATGTCAATTGTCATATTCATTGAGAAATTC ACTCTTTGTATATTTCTGAGGATGCTTGTGGTAATGATTTATGCATGGATACATTGGGACACGAGTATGAACTGTGGTGAGTTTGTTTAAATTTGATTAT CATGTCATGTTTGGTTGCAATAACTTCTCAACTGAACAGAAAGTCACAATGTGACTTTTGGTGCAAATCTAATATTTTATAGCTTCTTGTGGTTTTCGTT GTAGCTGGGATTTGCATTTTGTTTGTGATGGTGTGTAATTCTTGTTTTGATGTTGGTCCTTCACTCCTTCCCTTTTTCAATGGAAGTATAGGATTCATAT CCATCGATGTACATGATGTACTTGAGCATGAGGAAGAAGCAGAACTTCATTAGTAGTTATTATTGTTTTATCTGTCTTTAAGCTGCACGTATGGCAGTTC CCTTTTTCTCTGTTTCTGGGCATTATGAAATGTCGCTGCTGTTTCATAATTTGTTTATTTCAATTGTAAAACCTTGTAGAAGTTTTGTTCATTCTTTCTT CCTATTCCCATTTCCTCTCTTCTCCTTATGAGAATGTTGTAGCTGGCTTCTATATATATTAACAATCATCTTTGTCATGTGATGGCATACTGATAACCCC AAGGTTCAGTTTGGTATCCCCTTAGATTGAAGAGAAAAAAGATACGGGATGGGTACTTCCTGAAGACTATGATTAGAAGGGAGATCAAACTGACCCCAAT TCCATATCGCTTTCATGTACTGTATAACTTGAATGTTTGTTTTGAACTTCTGCTTTTAATGTAATCTTTCAGGTAGGTAAACATCTTAAATCCCTGACGA AGCATCCAAGGCAGAAAATTCGTGCCTTTGCTATTGACCTAATTGAGATATGGAAGGGCTTAATTATTAAGGAAACAAGCAAAAATAAGAACGGAGGCTC TGATAATAAGGTTGAGCCAGGCAATGGGGAGAGAGCTAAAGTTGCAAAATTTCAAAAGAGTCCTTCGGTGAAGGTTGAGAAGGCTGAAACTGTCAAGGTT GAGAAAATTGATAGGAAAGGTACACCAAGTTCAAGCTCAGACAGTACAAAGAAGGCGCAAAATGTGGATGCCAGAATTGAGAAAACTGATCATGCTGCAA ATGGTAAGGTGGAGAAGCAAGTTTCCGGGGTGAAGAGAACGTCATCCATCTCTGCTGCTCCTCCGAAGCTAAAGACTATGATTAAATCTAATGATTCGGT TCGAGACAAAATAAGAGAAATTCTCCAAGAGGCTTTATCTAAGGTTCCTGGAGAGGCTGATGAAGATGTCATGGATGAAGTTAATGCATGTGACCCTATT CGTGTTGCTGTGACAGTGGAGTCTCTATTATTTCAGAAATGGGGTCCTTCTAATGGGGCTCAGAAGGTCAAGTATAGGTCCCTAATGTTTAACCTTAAGG ATCAAAATAACCCAGATTTTCGTAGAAAAGTTCTACTTGGTGTTATTGAGCCAGAGCGACTGATCAACATGAGCACAGCAGAAATGGCTAGCGAGCGAAG GAAACAGGAAATTCAGAAACTTGAAAAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCAACCAAAAGCCACAACAGATCAATTTAAGTGTGGTCGATGT GGTCAAAGAAAAACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACGACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGT TCTGTTAGCATAGTGATGACCGGTGAGTCTCATTAGAGCTATTGTCATTTGTTGCTTATCTAGGGTATCAAGCTCAGTGTCATTATGGTTTCACACTGCA GCCATGTCAAAATTTTCTATTTAGAACTGTTGCATGTAGAAAATTTTAGTCAGTAGTGTACTTTTTATTCTTTTAAGTTTTAACCAAAGTTATTACTTCA TAGTAATTTGCTATTAATGGTGCTAATTTTTCTGTTACAAAATTGTGTCAATGACTCTTCTCATGTTTCTGCTGGCTAGTAACTACAATACAAAAAAGTC TAGTTGATCACAACAAAATGCCCAGCTTGCTAGAACAAAGTGCACTATTTGGTTTGGACAATAGTTTTCTCTGTTTACATCCCTTTTCTTCAATTCTGAT ACAATGCACTCCACTGACC BLAST |
| Tissue | pods |
| Gene name | LI_gene_163944; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_419650
| Blastp | Transcription elongation factor TFIIS from Arabidopsis with 69.32% of identity |
|---|---|
| Blastx | Transcription elongation factor TFIIS from Arabidopsis with 51.94% of identity |
| Eggnog | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (By similarity)(COG1594) |
| Kegg | Link to kegg annotations (AT2G38560) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019437269.1) |
| Pfam | Transcription factor S-II (TFIIS), central domain (PF07500.13) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |