| Id Trinity | TRINITY_DN48791_c0_g2_i6 |
|---|---|
| Name Transcript | Ll_transcript_419998 |
| Sequence | GCTAAATCCTAAAGAGAATAGTTTGATGAAAAAACAAAAAGTAATAGCAACAGATAGTTACAGTAAAATGTGAATGTGAGTATAAGAGACAAAAACAAAA AGTTTTGGTTGCGTGGTATTGTATGAGTGTATTGCTTCTTCTCTTTCTGTCTTTGGTCCAACACCAACACCCAACCCCAACCCACGACAACAACATAGAA CGGTGCCGCCTTACTTCACCATCTCTCCAAAATCTAACGTTAATTTCCACTCAAACAATCCAAACCCATCTCATCATTTGGCCCATAAACCCCGTTCTAT ATTCCATTCCCCATCTCAGATCCAAACATTCAAACACTCTCTCGTGTTCTTCATTTTCATGAATTGGAATGCGAGTTTTCCTTAATTGTCAAAGCCAGCG TTAGATTTTGAAGAAACAACGAAAGATGGTTGGAGGAAGAGTTGTGAAAGTGAAGAGAGATACGCTACGAGCATGCATGACATGCCCTCTTTGTCATAAA CTCTTCAAATATCCTACTACTATCTCTCTCTGTCTTCATACCTGTTTGTTTCTCTTTCTCACTTCTTTTTTATCTCTTTTCTCAATTGGGTTTTCATCTT TCTTCTTTTCTCTTTCACATTTTCACGTCCAATTAGTTACATCCATTTTTTAGTGATTTGGTATTTCAGTTTTCAGTTTAATTCCTCTATTCTTTCTTGT CACTGTGTTGGGTGATTCATGATTTGCATTTTCTGTCCCTGTTCCTACCAAAAAAATAATCTTTCTATTCAACATGTTACAGGACTCTGGTCTTAATTAT ATTTTGATATAAGGATTTTGTGACTTTTTTGTTACCATGATAAGAATGTTCAACTGTTTTTTTTTGTTACAGTACGTGGAGCAATACAAGTACTTTCCTT TTATGTGATTTATTGGTTGTTTTGATTTATGTGATTCTGTCTTATTTCATTTTGCTGCCATAGTTTAGACTATAGTTATGGAGCTTATTTTGGTCTTGCC CATTTAAGGTGGTACACTGTGTTATGGAATTTCTTAAGGAAGTGCAGATGTAGTTGAATTTCATGTTTATTTTATAATACTGCTATCACATTATATTTAC TTGTTGCATTCTTGAATTATACACATATACAATGTATTGAGCAATGAATCCGGAACCAGTTTGCAGGAAGTGCATATACGAGAAATTCTCGGATGACGAG GTGGATTGCTGTCCAGTGTGCAACATTGATCTGGGCTGCCTTCCAGCGGAAAAACTCAGGCCAGACCATAATTTGCAAGACATAAGGGCAAAAATATTCC CTTTTAAAAAGAAAAATATTAAGACTCCAGAAGTTTTGTCTTCAATATCCCTGCCTGCAAAGAGGAAGGAAAGGTCGCTCTCATCATTGGTGGTTAGTGC TCCGAAAGTTTCGATGCAAAGTGGCTTTACTGGAAAGAGAACAAAAACCAGTACAAGAAAGGCTACTGCTTTACGTGGATGCAGTTTTATTCTTGAAGAA ACCATAAAGAAGGAAGCAACGTGTGAAGATAATATGGATTCTTCTGTGGCTGAACCTTCTAAAAAACATAAGCCTGGTGAAGATATAGAGGACAGTGTAG AACTTACAGAAGGGAAGGCTGATTTATGGACACCATTGAACTGTCTTGTTGAAGCTGCCAATAGAACAAAGTCCTATAGGTCAAATTCACATGCAACTCC TTCTTCCAAACTAGATTCTCCAACTACCCCTTGTGGTGATGTTGATATGTCTACAAATGCAAACAAACCGGAGCTACCGGCTTCTGTCCAGAGTGAATTA AGCATTTCTAAAACCAAAAATAAGGATAACGGACATAAAACAAAATTTGGAGATGACAAGGATGGAAGCAGCTTGCCCTCAAGACCAGTGAAGCGAAAGA GGTTGCGTCCTGCCGGCCAGAAAAGAGTTGAAGCATCTGAGATGTCTGCGTCAGCCCAAGTCGTGCTAGATGCTTCAAATGGAAAATACAACAGAAAAAA CAGTCCCATTTGGTTTTCATTAGTTGCTTCAGACGACCAGCAAGTTAGTTTTTTATATGAAAAAATCGTAGTAATCAAAAGGTGCCGATCTTCCGTTAAC CTTGAAGAAATGGATGTTATCATGCAGGAAAGGAGATTTTCCACTGCCACAGATCTCAGCATGTTACTTGAGAATAAAGTAATTCTTCTGAATCTCATTT TCATTCTGTTTATTTGGTTTATTTTTAAGTGAGTACAACTTTGGCCTATGAGTTGAACATAATGTAGTAACTTTTCTCATTTATTGTGTAAAAATAATTG TAATAAGATACGAATAATGTTTTTACTATTCACATGTTCTCTCAGTATTTCCTAAACTGAAACCTACGAGAAGAAAAGTTACTGTATATGAAGGTACAAC TCCCCATATTTTTGAACAATTTTCTGAGAGCAGTCATAAAATCAGAAAAGAGCATATTGATGTTCATTATCTAATTCATTACTTGATTTTGTTTTGCTAT GATCATTGTCTAATTCCCCAGACCCTACTAAGTGGGAACCTCGTGTATTGGGCCGACATTTTTTTATGTTATTCTAGATGGAAAATGCACACTGATGATC ATTGTCCGAGCCACAGTTTAGCAAAGGAGAACTTAACTTCCATATTGAATAATTTGAAATGAGTTGATTTTTCCTGCCTTTTTCTTTCTATTGTTGCATG CCCTTTTTGTTTCCGGTTTCCTTTTTCTTCTACTTTTATTGAGTACAATCCCTTTTTTCATGATAAGTATATGTAGGTCATACATAATTGTGTAATTCTT TGTTCTGTACCTCGTCACAGGGATGGCACTGTACCTGTCTCGTTTATTCAAAAGTACCTTGTTAAGAAACTTAATCTGGCCAATGAAGCAGAGGTGGAAA TAATGTGCCGTGGTCAGCCAGTTCTCCCATCTCTGCAACTGCATAACTTAGTAGATCTATGGTTCCGGGCTGCATCAACCTCAAAAAAGATACCGGCATC CGTGGGGTCCTCGGCTAAGGATTTTGTGATGGTTTTATCATATTGTAGAAAGCCCTTGCCTACTTGAGAATCTGAGATTGTCCCCTATTACATTTACATC ATTTTATCCTCAATACTTTACATACATGTTCAACTTGTTTTTATAACATTGTCACTGAGATTCCTGCATAGGAATGTGTTCATTTAATTCCTAACATTTG ATGAATCTATTTGAGTTTGTTTTGCTAATGACCTGAAAACGTGCACCCTCCAATTTTATTGCATCTGCTTTGTTTGGTGTTATTCTTAGAAACATTTGTT ATTTATTGTTGATTCGATCATGTCTGCC BLAST |
| Tissue | pods |
| Gene name | LI_gene_163988; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_419998
| Blastp | E3 ubiquitin protein ligase DRIP2 from Arabidopsis with 39.94% of identity |
|---|---|
| Blastx | E3 ubiquitin protein ligase DRIP1 from Arabidopsis with 37.7% of identity |
| Eggnog | Polycomb group ring finger(ENOG410XPCN) |
| Kegg | Link to kegg annotations (AT2G30580) |
| CantataDB | Link to cantataDB annotations (CNT0002431) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453411.1) |
| Pfam | - |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |