Ll_transcript_285901

• Id Trinity: TRINITY_DN48824_c2_g1_i3
• Name Transcript: Ll_transcript_285901
• Sequence: TAAAAAAAAAAGAAGTGCAAGAATTCAAAACGTTGATTCCCTCGCAGTTGTTGCCCAAAATTCATATCCCCCAACCCTATTTATACGCTTCACTTTTCAT TGCTTCTCACAATTCATTCTTTTTCATTTTTCATTTTTCATTTTTCAATTTTCAATCTCTCTCTCTTGTTCCTCCCAACCACTCACATTTCACCAAATGG CCCAATCCAGCGACTCCAACTCAGTCCCGAACCGTCGTCTCCCATGCGACTCTGACGGCGTTTGCATGCTCTGCAAGACCAAGCCAACCGCCGTCGTTGA CACTCTGACCTGCAACACATGTATCACTCCTTGGCACCTTCCCTGTCTCCCTCTCCCCGATCGCCCTCCCACCATGTCCGACGCTCAGAATTGGTGCTGT CCTGACTGCGCTGCTCCCGCCGCCGTCACCCACCCTCTCCCTCACCCTTCCTCCGATGATCCTTCTTCTCAACTCATGGCTTCTATTCGGGCCATCCAGG AGGATGACTCTCTCACTGATCAACAAAAGGCCAAGAAGCGTATGGAAATCATGCTCGCTTCCTCTAACATCGCTGATTCTAGTAACCCCTCTTCTTCTGC GCCTCCTGGCGTCAACGCTGCGCTTGATATCTTTGATGGAAGCTTCAACTGCTCTATTTGTATGCAGCTACCTGAGAGACCTGTCACGACACCCTGTGGT CATAACTTTTGCTTGAAGTGTTTTCAAAAGTGTTTCTCACAAGGCAATCGAACATGTGCTAATTGCCGTGGCGCAATACCGCTCAAGATGGCCACCAATC CTCGCATCAACTCCCAGCTTGCATTTGCCATCAGATTGGCAAAGATGGCCAGATCTGGCTGCGCCGTTCCTGCGGGTGTTCCTAAGGTATACCATTTTAT CCACAACCAAGACCGTCCTGACACCGCTTTCACCACCGAGAGAGCAAAGAAGACTGGATTGGCAAATGCCTGCAGTGGGAAGATCTTTGTGACCGTTCCC CCGGACCACTTTGGTCCCATCCCTGCAGAGAATGACCCAACAAGGAACCGTGGTGTTCTTGTGGGAGATACTTGGATGAACAGGATGGATTGTAGACAGT GGGGTGCTCATCTTCCCCATGTTGCTGGCATTGCTGGCCAGAGTGCTTATGGTGCTCAGTCTGTTGCCCTCTCTGGGGGGTATGTTGATGATGAGGACCA CGGCGAGTGGTTCCTCTACACTGGCAGTGGAGGAAGAGATCTTAGTGGCAACAAACGCACAAACAAGAACCAGTCATTCGATCAACAATTTGAAAATATG AATGAGGCTCTCAGACTAAGTTGTCTAAAGGGCTATCCGGTGCGTGTTGTAAGGTCCTCCAAGGAGAAGCGATCTGCATATGCACCAGATGAAGGTGTAA GATACGATGGTGTCTACAGAATTGAGAAGTGCTGGCGCAAAGTGGGACAACAGGGTTGCAAGGTCTGCCGGTATTTATTTGTGAGATGTGACAATGAGCC TGCACCATGGACAAGTGATGAATGTGGAGACAAACCGCGCCCACTGCCTAAAATTAAGGAGCTGCAGGGTGCAGTTGACTTAACCGAAAGGAAGGCAGCT CCATCATGGGATTTTGATGGGGAAAAGGGCTGTTGGTTGTGGAAGAGGCCTCCACCAGAAAGCAAGAAATCGGCAGGCACTGTAAGCCCTGTGAAAGGAC AAATAAGAGCGGTTAAACGAAAAGTGAAAGTTGCATCTGTAAAAGACAAACTCCTGAAAGAGTTTGCTTGCCAAATCTGTCGCAAGGTGATGTGTAACCC TCTAACAACACCCTGTGCTCATAACTTCTGTAAAGCCTGTTTGGAGGGAGCATTTTCAGGCCAAAGTTTCATCAGAAAAAGGGCTGTCCAAAGTGGACGT TCATTACGTGCACAAAAGAACGTCATGAAATGCCCATCCTGCCAAAACGACATAGCTGAGTATTTGCAGAACCCACAGGTTAATAGGCAAATGATGGGTA TCATAGAATCACTCCAGTCTGAGGCTGAACAGTTGGCGGAGAATTCTTCAGAGTCAAGTGACAAAAATGATGAAAATCAGAAGAATGAGAGTGATGTTTC GGAACCTTGTGAGGAGGAGGAGGATGGTGATGATGATGATGATTCAAGTGAGAAGGTCCTGGAGGAAGTTAAGGACAATGATCTGAACTTGCCACCACAG AAGCGGAGGAAAGTGGCTAAAGGTGCAGTTGTGGTGACCGAAGAGGAACACATTGATGAAGTTGAACAAGACAGTGTGAAGGCTTGCGCTTAAAAAGGTT GGTGATGGGTAGCAGTGAAGTTTTTTGGATGTGGTCATGCGGTTGTTGCAGTGAAGTTTTTTGGATGTGGTCATGTGGGTGTTGCATCGCTCATGTGAAT TGAATTATTTATAGCCTTATTATCTCTCAGACATGAACTGAAATATGTCTTTTTTATAATTTTTCTTGAATTGGCAGTGCATAGTTTTCTGAACTTTGGA ATGAGTAACTGCTATGTGTAGCAGTAGGTTTTCTTTTTGTCAAACTAAATGAAATGAATGAATGCATTTTGTGATGTTATGCAATTCTTGTTCCTCATAT TTAGAATAATAATCAAGGGAATTGAATCACTGCCACCACAAGGAGGATGAACC
• Tissue: pods
• Gene name: LI_gene_164236;
• Additional information: details;

Expression of Ll_transcript_285901

FPKM

• PAB: 0.8
• PNAB: 20.7
• PS1: 11
• PS2: 10.2
• PS3: 14.4
• PW1: 5.1
• PW2: 2.1
• PW3: 0.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_285901

• Blastp: E3 ubiquitin-protein ligase ORTHRUS 2 from Arabidopsis with 60.71% of identity
• Blastx: E3 ubiquitin-protein ligase ORTHRUS 2 from Arabidopsis with 60.66% of identity
• Eggnog: ubiquitin-like with PHD and ring finger domains 2, E3 ubiquitin protein ligase(COG3440)
• Kegg: Link to kegg annotations (AT1G57820)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435773.1)
• Pfam: Zinc finger, C3HC4 type (RING finger) (PF13920.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;