| Id Trinity | TRINITY_DN48891_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_286552 |
| Sequence | AACCAGATGATCCAAGAAACAAAGGAGAAGGGTCGCATCTACAAGAAGAAGTTTCTAGAATCATTCACCGAAGTTACTGACATCGACACAATCATCGAAC AATCTGAAAACCCCCAACTGGAATCCGATTCTACCCTTCGCATCAATCTGGATCCAGGATCTGGGTCTAGTGGCATGACACCTGAAGAGATGAGGAAGCA GCAGAGGAGAGAGGAGGCACTACATGCTAGCAGTCTCCGAGTTCCACGCAGGCCACCCTGGACTGCAGATATGTCTGTGGAGAAGCTTGATGCTAATGAA AGACAATCTTTCTTGACTTGGCGTCGCAGCCTAGCAAGGCTTGAGGAAAATAAGACGCTTGTCCTTACTCCATTTGAGAAAAATATTGATATCTGGAGAC AGCTCTGGCGGGTTGTGGAGCGCAGTGATTTGCTTGTTATGGTCGTTGATTCGCGGGATCCTCTGTTCTATCGCTGTCCTGATCTTGAGGCTTATGCACG GGAGGTTGATGAGCATAAACACACGTTACTTTTGGTTAATAAGGCAGATCTTTTACCTGAATCTATCAGAGAGAACTGGGCAGAATATTTTCGTGCTCAT GATATTCTTTTCATCTTCTGGTCAGCTAAAGCTGCTACTGCTGCTCTGGAAGGCAAGAAGCTTGCTTCATCATGGGAGGCTGATAACTCGGGGAGAACCA ATAACCCAGACACAAAGATATATGGAAGGGATGAGCTTTTAGCCCGCTTGCAATCAGAGGCAGAAGAGATAGTTGAAAGGAGGAGAAATTCGGGCTCCTA TGACACAAAGCATTCTGAGGTTAAATCTCCTCACGAAAATGCTGCTGGTAGTTCATCATCAAGTAATGTAATTGTGGGATTTGTTGGGTACCCTAATGTT GGGAAAAGTTCAACTATTAATGCTCTGGTTGGTCAAAAGCGGACTGGTGTCACCTCTACTCCAGGGAAAACAAAGCATTTCCAGACATTAATTATTTCTG ACAGGCTCACCCTTTGTGACTGTCCTGGGGAATCTATCCAAGTTGTAGCTGACAGAGTCCCAAGACATGTCATCGAGTCAACTTATAAGATCAAACTTCC TAAACCTAGGCCATATGAGTCCCAATCTCGTCCCCCTCTGGCATCTGAACTTCTGAGAGCATATTGTGCTTCTCGTGGGCATGTTGCCTCCAGCGGACTT CCTGATGAAACCAGAGCTTCCCGTCAGATTCTGAAAGATTACATTGATGGGAAGCTGCCTCACTATGCAATGGCCCCTGCCGCGTCGAATGAGGAACTTG CTGTAGAAGATCCTGCAGGGCGTGACTCCTCAGATAAGTTGCATGAGCCAGATTCATCTGGTATTGAAGATTCTTTAGATGTTGAGAATGAAGTTGCACC ACCTAATCTTGAACACGCATTGGATGACCTCAATTCATTTGACATGGCAAATGGACTTGCTGCTTCAAAGAAAGTTACTATCAAGAAGTCCAAGGAGTCT CAAAAACAGCATAGAAAGCCTCAGAGGAAAAAAGATCGCACATCAGAGAATGATAGTGGTGATGGAACACCAATTGCAAGAGTCCTTCAGAAACCAGTAA ATACAGGTCCTTTGAAGGTCTGATAGGTCATGCCCTCTGGTTTTTATACAACATCTTATCTGTTATAGATAGAGTCATGTATATTCTGTTAATCTGAGGT GGAGCAAGTTATAAATGGTGTTTGTTTGTAAGGCATTGCACAAATAGAACATAGGTAGTCCTACTGAAATCACTCCATAAACTGGGGTTAAGGTTAGGGA AAATGTTATGTATTCACAGCTGCTCTTATGGATTTGAGGAAGATTGTCATAATAGGATTGGAGAATAAGGTTAGTATGGTTCTTTTAAAACCCTTGATAT CTTCAAAATCATCTGAAAATTTAAAATCTAAATTGAGTCGGGAAGAATCTATTTAAAAAGGCAAAACTGGGTGGTGTTTTATTTTTGTAATACATAATGA CTTCTTATTTTTTGGTACTACTAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_164839; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_286552
| Blastp | GTPase LSG1-2 from Arabidopsis with 60.82% of identity |
|---|---|
| Blastx | GTPase LSG1-2 from Arabidopsis with 60.82% of identity |
| Eggnog | Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (By similarity)(COG1161) |
| Kegg | Link to kegg annotations (AT1G08410) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453829.1) |
| Pfam | 50S ribosome-binding GTPase (PF01926.22) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |