Ll_transcript_286553

• Id Trinity: TRINITY_DN48891_c0_g1_i7
• Name Transcript: Ll_transcript_286553
• Sequence: GGGTTAAAGTGTTAAACCCTAAATTGCCGAAAGCCACAACACAAGTTTATTCGAGAAAAGAAAAAGCGGTGGAACGAAGCTGAAGTTGGGTGACTCTGAA TTTGAGGGTTTAAGGTGAGATAAGAAAACAACGGTGGTTGATTGATTCCATTGGCAACAATGGGAAAGAACCAGAAAGTAGGGTTAGGGAGATCCCTTGT TAAGCAACACAATCATATGATTCAACAAACCAAAGAAAAGGGTCGTATCTACAAGAAGAAGTTTCTAGAATCATTCACTGAAGTTACCGACATCGCCGCC ATCATTGAAAAATCGGAAAACCCCGACGCCGATTCCGATTCCGATGCCGATGTTCCTTTTCTGCCCCCCGCACCGCCTACCCTTCGCATCAATATGGATC CAAGGTCCGAGTCTGTTGACTTGACGCCTGAAGAGATGAAGGAGCAGCAGAAGAGGGAGGAGGCACTGCATGCTAGCAGTCTCCGAGTTCCACGCAGGCC ACCGTGGACGGCAGACATGTCTGTGGATGAGCTTGATGCTAATGAAAGACAATCTTTCTTGACTTGGCGTCGCAGCCTTGCTAGGCTTGAGGAAAATAAG ACGCTTGTCCTTACTCCATTTGAGAAAAATATTGATATCTGGAGACAGCTCTGGCGGGTTGTTGAGCGCAGTGATTTGCTTGTTATGGTCGTTGATTCAC GCGATCCTTTGTTCTATCGCTGTCCTGATCTTGAGGCTTATGCACGGGAGGTTGATGAGCATAAGCGCACATTGCTTTTGGTTAACAAGGCAGATCTGTT ACCTACTTCTATCAGAGAGAAATGGGCAGAATATTTTCGTGCTCATGATATTCTCTTCATTTTCTGGTCAGCTAAAGCTGCTACTGCAGTTCTGGAAGGC AAGAAGCTTGGTTCATCATGGGAGGCTGATAACATGGGGGAAACTAATAACCCAGACACAAAGATATATGGAAGGGATGAGCTTCTGGCCCGCTTGCAAT CAGAGGCTGAAGAGATAGTTGAGAGGAGAAATTCAGCCTCCTCTGACACAGGACCATCTAATGTTGGTAGTTCGTCGTCAGGTAATGTAATTGTGGGATT TGTTGGATATCCTAATGTGGGGAAAAGTTCAACTATCAATGCTCTGGTTGGTCAAAAAAAGACCGGTGTTACCTCTACTCCAGGGAAAACAAAGCACTTC CAGACATTAATTATTTCCGAAAAACTGACCCTTTGTGACTGCCCTGGATTAGTTTTTCCATCTTTCTCAAGCTCAAGATATGAGATGATTGCTTCTGGAG TGTTGCCTATTGATAGGATGACTGAACACAGGGAATCTGTCCAAGTTGTAGCTGATAGAGTCCCAAGACATGTCATCGAGGCGACTTATAAGATCAAACT TCCTAGACCTAAGTCATATGAGTCCCAAGTCCGCCCCCCATTGGCATCTGAACTTATGAGATCGTATTGTGCTTCTCGCGGGTATGTTGCTTCTAGTGGA CTTCCCGACGAAACTAGGGCTTCCCGTCAGATTCTGAAAGATTACATTGATGGGAAGCTGCCACACTATACAATGCCCCCTGGTGTGTCAAACGAGGAAC TCACTGTAGAGGATCCTGAAGGACATGACTCTGATAACTTGCAGGAGTCAGATTCATCTGGTATTGAAGATTCTTCAGATGTTGAGAAAGAAGTTGCACC AGCAAATCTTGAACACTTATTGGATGACCTCAATTCATTTGACATCGGTAATGCACTTGCTACTTCAAAGAAAAGCAGTGTTAAGAAGTCCAAGGAATCT CAGAAGCATCATAAAAAGCCTCAGAGGAAGAAAGATCGTACATGGAGGGCCGGGAATGATGGTGGTGATGGAACGCCGATTGCAAGAGTCTTTCAGAAAC CAGTAAACACAGGTCCCTCGAAGGTCTGATAAGGTAATGCCCTCAGGTTTTTGTACATGTTGTCTGTTAGAGTCATAAGTACGTTGTTGATCTGAGGTGT GTGGTGGAACAAGTTATAAATGGTGTTTTTTTGTAAGGCATTTCACAAATAGAACGTAGGCATTTATACTACTCAAGGTTATTCACAGCAGAGTTCTTAT TGATGTGAGGAAAATTGTCCTAGGATTGAAGAATAATATTATCATTTTAATTATTGTAAACCTTTGATATGTTAAAGTCATCTTTAATTTTGATTATAAT CTATTTGACTCGGGAAGAATCTATATTGAAAAAATCAAA
• Tissue: pods
• Gene name: LI_gene_164839;
• Additional information: details;

Expression of Ll_transcript_286553

FPKM

• PAB: 4.3
• PNAB: 17.2
• PS1: 14.1
• PS2: 10.3
• PS3: 11.7
• PW1: 12.2
• PW2: 11.3
• PW3: 8.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_286553

• Blastp: GTPase LSG1-2 from Arabidopsis with 65.5% of identity
• Blastx: GTPase LSG1-2 from Arabidopsis with 65.94% of identity
• Eggnog: Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (By similarity)(COG1161)
• Kegg: Link to kegg annotations (AT1G08410)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019448890.1)
• Pfam: 50S ribosome-binding GTPase (PF01926.22)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;