| Id Trinity | TRINITY_DN48910_c3_g3_i1 |
|---|---|
| Name Transcript | Ll_transcript_436668 |
| Sequence | GGGTGTGTATGTCCATATACATAAACGCGGGAAAATGCAAGCTTCAGCCTCCAAAAGACTATTCAGTCTTATTCTTTTAGATCAGTAGAGAGCTACTTCA ACCTCGTCTAACCGTAAAGCCTCCGATATCATCGTCGCGAACAATGAACGGCGCCGGAAACCGTAGATGGGAGCGCAGAGACAATAACAACAACAACGGA GGATCCAATAAGCAGAAGCTGATTCGTAGCGCTGAGGAAGAACTCGAATCCAAATTAGGGTTCGATATTTTCTCCGAGGGCGATAAACGACTTGGATGGT TGCTCAATTTTGCAACGTCATCGAGTGAAGATGAAGACACACACAAAGTCTACAGTTGTGTTGATCTATACTTTGTTACACAGGATGGGTCTTCATTCAA GACAAAATACAGATTTCGTCCTTATTTCTATGCAGCTACGAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGGCGACGTTATGAAAGTCAGATT GCAGATATTGAAATAATAGAGAAAGAGGACTTGGATCTTAAAAACCATTTGTCTGGATTAAAAAAATATTATTTAAAGATATCATTTGATACCGTGCAAC AATTGATGAATGTGAAGAGGGACCTCATGCACGTAGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGATGCCTATGAGTCTATATTAACTGGGAGAAG AGAACAAAAACCTCAAGATTTTCTTGATTGCATAATCGATCTCCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGAGT GGCCAGTGGTATGATGTTGGAGTGTCCAATACTGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCCGAAGTTCGTGTCTGTGCATTTGATA TTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGACTATGATATAATTATGATGATTTCATACATGGTAGATGGACAAGGGTACTTGATCATAAA CCGAGAGCGTGTTGGGGCAGATATAGAAGATATAGAGTACACTCCAAAGCCAGAGTTTGAAGGGTGTTTTAAGGTTACAAATGTCCAAAACGAGGTTCAG CTTCTCAGATTATGGTTCTCTCATATGCAAGAGGTGAAACCTGGTATCTATGTGACTTATAATGGTGATTTCTTTGATTGGCCATTCTTGGAACGAAGGG CAGCCAGCCACGGGTTCAAAATGAGTGACGAATTGGGGTTTCAATGTGATACAAATCAAGGAGAATGTCGTGCCAAGTTTGCTTGCCATTTAGATTGTTT TGCTTGGGTTAAACGTGATAGTTATCTTCCACAGGGGAGCCAAGGCCTAAAGGCTGTCACAAAAGCAAAGTTGGGTTATGATCCGTTGGAGGTAAACCCC GAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCTTCCTACTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTTC ATCCCTTTATTTTCTCTCTTGCCACTATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTCCA GGCATACAAGGCCAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAACCATCTTCTTGAGAGTGAGACATACATAGGTGGC CATGTTGAATGCCTAGAAACTGGTGTGTTTAGATCTGATATTCCATCTAGTTTTACACTCGAGCCATCTGCCTATGAGCAATTGATCAACAACCTTGATC GAGATCTACAGTATGCTATTAGAGTAGAGGGCAAGATGGATTTGGAATCTGTCTCCAATTACGATGAAGTAAAAGATGCTATCATGGAAAAGCTGATAAA ATTACGAGATAAACCAATACGTGAAGAATGCCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCA CCATCAATTGTTACGGATGAGGTTTGCACCGCTTGTGATTTCAACCGTCCTGGAAAGACTTGTTTACGAAATCTTGAGTGGGTTTGGCGCGGAGAAACAT TCACAGCAAAGAAAAGTGACTATAATCATGTAAAGAAGCAGATTGAGTCAGAGTTTGTTGAGGGTGCTGATGATAGGCCATCAAAGTCTTTTCTCGACCT GCCCAAGTCAGAGCAACAATTAAGGCTGAAAGAGCGTTTAAAGAAATACTGCCAGAAGGCATATAAACGGGTACTCGACAAGCCAGTTACTGAACTTCGT GAAGCAGGAATCTGCATGCGCGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTTAATAAAGTTTGGA AGGGAAAACTATCTGAAGCAAAATCCAGTGGTAATTCTATGAAGATCCAGGAAGCACAAGACATGGTAGTGCTTTATGATTCATTGCAACTTGCCCACAA GTGTATTCTTAATTCCTTTTATGGATATGTGATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACTGGTGCGAAAATC ATTCAGAATGCCCGCCTGCTGGTAGAGAAAATAGGGAAACCACTTGAACTTGACACAGATGGAATCTGGTGTGCACTTCCTGGATCATTTCCAGAAAATT TCACTTTTAAAACAAAAGAATCAAAGAGGAAGTTGACAATCTCATACCCTTGTGTCATGCTTAATGTTGATGTGGCAATAAATAATACAAATGACCAGTA CCAGACCCTCACAGATCCTATTAAGAAAACTTATACAACTCATAGTGAATGCTCTATTGAGTTCGAGGTGGATGGACCATACAAGGCTATGATCCTTCCT GCTTCCAAGGAAGAAGGAATTCTAATTAAAAAGCGGTATGCTGTTTTTAATGATGATGGAACTCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGAG GTGAACTGAAGCTAATCAAAGTTTTCCAGGCTGAGCTTTTTGGCAAGTTTCTCCATGGCTCAACCTTAGAAGAATGCTATTCAGCTGTCGCTTCTGTTGC AAACAGCTGGCTTGATCTTCTTGATAGCCAAGGAAAGGATATCGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTA GTTGATTATGGTGAGAAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCTGACTTTCTAGGTGTTGAAATGGTCAAAGACAAAGGTCTTCGATGTC AATACATCGTAGCAAGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAGACAGATGCTGACAGGATGAAGTTCTTTGT TCGGAAATGGTGCAAGGTCTCATCAGATGTTGGCATCCGATCAATAATTGACTGGTCCTATTACAAACAGCGGCTTAGTTCTGCAATTCAAAAAATTATC ACTATCCCTGCTGCAATGCAACAAGTTGCAAATCCCGTCCCTAGAGTAGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTC GCCAACGAAAACTAGTTGATCTCTTCCCAAAAGTAAGCCGGGATGAGTGCTTAAAAAGGCATGACGAATCTGATAGTATCCGCCTTGTGAGGGATGAAGA GATGGTTAATGACTTGGAGGACTTCGGAAACAAGACCAAGAATTCTACATTTGGACCTAGACCAATCATACGACATTATGAAGCTAATAATGAACGACAT CCTTTGAATGCCAATTGTGAAGAAGGTTTTGACCAGCAACAAAATGATAATAACAGCAATGATCAGCCACTTTCACAAAATGATATATCGTGTGATGATG TGGATAGAACTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAACATATCCTAGAAAGGAGAAAGAAGCGAAGATTGCAGAGTTCTAA GAATTCTGACCGTGTATATGACACTCTTGAACAAATAAACGGTAAGAATAATCAGGGAAGAAGTAATATCAGTTCATATTTCAGAAGACATGAGGTGCTT CTGACGCAGTACCACTGGCAGATAATACAGCTTGTTCACAGTTCACAGATTGGACAGTTTTTTGCTTGGGTTGTTGTTGATGGGGTTATGGTTAAGATTC CTGTTTGTGTTCCTAGAGTCTTTTACCTCAATTCTAGATCACCAATTACTGAAGAATTTCTGGGCAAACGTGTCAACAAGACTCTTCCTCATGGAAGGCA TAGTTATAACCTGTATGAGGTCACAATTAATGAAGTTCAGTTTAGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTTGCTGATCCTGATGTTGAGGGAATA TATGAAACCAAGGTGCCACTGGAGTTCAAGGCTATAATCCAACTTGGTTCTGTATGTAAGGTGGACAAAACTGCTAAAAAACGTAGTCTACAGGACCCAT GGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGTTTATCTCGAAAAGTCCATACAGTTCTTTTACCTCTATCATAGCATCTCTGAGGGACG CGCTATATATGTTGGGTATTTTCCTGTATCGAAAGTAATAACAGTTGTGGTAGTTAATCCCTACCAAAACAAAGATTTATCACCATCTTTTCTTGAAAGA CAATTTCATGATGGCTGCCGAGCTTTGTCTATTGAGGCACCTCCCAGGAATGACATTACTTTTAAGGTGGACTATGTTGGATATGTCAAGGATGCTGAAA CAGTAATGCAAAGAGCAATAGATGATCACAGGAATGAACATCATGGTCCTATGGTTGCTGTCATTGAATGCCCCGATGTTCAACTTGTAAAATTGGGTAT TCGAGCGCTAGATGAATTTCCATGCCTGAGTGTACCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAACTTGCTGCAAAAATTGGA ATGCAACGTTGTGCCGCGTCAGCCCAATGGCTTAACGAGAGAATTGCTATCTCAAGATATGCGCATGTGCCATTGGGGAATTTCGAACTTGACTGGCTTA TATTTACAGTGGATACCTTCTTTTCAAGAGCGTTGCATGATAATCAACAGGTACTTTGGATATCTGATGACGGTCTTCCAGATTTAGGTGGCATCAGTGA TGAAGAGACCTGTTTTGTGGACGAGGTCTTTCTCATCTATATGTGGCCTTTTAGTGACCCAATTTTGTACAAAACTTAAATGTCCTGCATTGTCAAGCAA TTATTATTATTGGAATGGTTATGGTATCCACTGTGAGTCGTCAAGCATTTGTTATTTCACAAAAAATGTATAATAATATATTGAATATACTAATATCCAA TAAAATGCTTGACTACTCACCCTTGATAGACGGGCACTGGAGTATGCCTTTTTTAATTATTCGGGATAACTGGGTGCTCTGACACTTGCTAAACTATCCC CCACCCCTCCAAAAAAAAACTAACCTTTGAATAATGACACATGATAGAATGACCACTTGAGAATTCTTTTTTGTAATGAAGTAACCATTTTTAATAATAT GATTGCCACAGTTGAACAAATTATTTTGTTAAAATCTATTGTCTGTGGAGGGACATCCACAAGTCTTTTACAAACTTTGATAATTCATTAATCACAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_164988; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_436668
| Blastp | DNA polymerase epsilon catalytic subunit A from Arabidopsis with 75.59% of identity |
|---|---|
| Blastx | DNA polymerase epsilon catalytic subunit A from Arabidopsis with 75.99% of identity |
| Eggnog | DNA polymerase(COG0417) |
| Kegg | Link to kegg annotations (AT1G08260) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019453891.1) |
| Pfam | DNA polymerase family B, exonuclease domain (PF03104.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |