Ll_transcript_437416

• Id Trinity: TRINITY_DN48913_c2_g2_i8
• Name Transcript: Ll_transcript_437416
• Sequence: TGTAGACTTATTTTCCTCCATGTTTGAACATAATAATGTTAAGAATGATAATAATGGAAAGAACACAGAAGAGCATTAGCACATAGGGGTTTCTTCTCAG ATTGGAATTGCCTGCCATACTCATTCTCGCTTACTTTCTGTGACCAACATTCAACAACAACAACAACAACACAATCTCTTCGAAGCTACCAACATCATTG TCTCTCTCTCTCTCTCTCTATATATATATATATATACGTGTGTGTGTGTGTATTTCTCTCTCTCTCATACCCCTGCGTCCAATTCCTCTTCTTACCCTCT ACCATATAATATAACAACCACAATCTTAAGACATGTATAGATATATTTTCCCAATATTCTATTGATTACTTTCTTCTACTTCGCTTCTTTGCTTTTTGTA ATTGTAAATGGCCAATGCATCTGGCTTCTTCACTCCTTCGCTTCCCAACTTCAGATTAAGGGTTCAAACGTTCATGGGTATTCACACATTTCAAGGATTT CCCTCCAAAGTTCTTTGCTTTGCTGCCATTCAAGGTGCTCATAAAACTACTTCTCCTTCCGAATCTCGCTTACCCAGGCTTGTCAGTCAAGGCTGCAAGT TAGTTGGATGTGGTTCTGCTGTTCCATCTCTTCAAATTTCCAATGATGACCTTTCGAAGTTCGTTGATACTTCTGATGAATGGATATCTACTCGCACTGG GATCCGTAGCCGGCGAGTTCTTTCAGGTAAAGATAACTTGACAAATTTAGCGGCAGAGGCAGCTAGGAAAGCTCTTGAAATGGCGAAGGTTGACCCTGAT GATCTTGACCTAATATTGATGTGCACATCTACACCGGAGGATCTTTTTGGTAGTGCTCCACAGATTCAAAAACAACTTGGCTGCAAAACAAATCCATTGG CTTATGACATTACTGCTGCATGTAGCGGATTTGTGTTAGGTTTAATATCAGCTGCTTCTCACATTAGGGGAGGTGGATTTAAAAATGTTCTAGTTGTCGG GGCTGATGCTCTTTCACGATATGTTGATTGGACAGACAGAGGGAGCTGCATTCTTTTTGGAGATGCTGCCGGTGCTGTACTAGTACAGGCCTGCAACAGC GAGGAAGATGGTTTATTTGGTTTTGATTTGCATAGTGATGGCAGTGGTCAAAGGCATTTGAATGCTTCCATTAAAGAAAACGATTCAAATAATGCATTGG ATTCTTCAAACGGTTCTGTGTCAGACTTTCCTCCCAGACAGTCCTCATATTCTTGCATTCAAATGAATGGCAAAGAAGTTTTTCGCTTTGCAGTACGATA TGTGCCACAATCAATTGAGTCCGCCCTTCAAAAGGCGGGTCTTCCTGCATCTAGCATTGATTGGTTACTTCTCCATCAGGTACAGATAAATGATATATAA AACAAAACTCGGGCATTTAATTTGATATCTAATACTTATCTATCTAGGGAATTTAGGCTGTGATTATTGCTGATGAATGAACCAAATCTTTCATTTGCCT TCCATAATAGTTCCTCGCACTATTACTTTTTATTATGGCAAATTTGATGATTATCCTTTGGTTGAATCACTAGTAGCAACTTGCTATGATATCTTGAAAT GGATGGACAAATGAATATACACTTTTGGATCCTTTTGCTATGTTTTTGTGATACGTGGCATCCTTAGAAGCACAGGTACAGATATGGATATGGAATTATG GATACAACATGATATTGATAAGTAGGTACCAAAAAATGTCATGAAATAATTGAAAGTATCGGATACCAGTACTACAAGCATTTTTAAGTATCAATGATTC ATAGGTGATATCCTAGGAGGATAATAGTACCTCTTAGTTCAGTTTTTATCTTTCTCATGCTAAACTAGCTGGTATCAATATCAAGTTTATTCATACATTG TTTTAAAAAAGAATGTCAAAATATAAATTTAAAGGGTTGGAAACCTGAGCTATCCTTTATGTTATGCAATTCAATAGTTGCATGTGTTATATTATCAGAA TGCTGAGTGGTAAGGCCAATTCAAAATAAAATAGCATTTAACTTGCATACATGAAGATTTCTTACATGCACTTTTGCTGCCTTACTTCTTGACAAGCACA GGCAAACCAAAGAATTATTGATGCAGTTGCCACTCGGTTAGAAGTTCCATCAGAACGTGTGATATCAAACTTGGCGAATTATGGTAACACAAGTGCAGCT TCAATTCCCTTGGCTTTAGACGAAGCGGTTCGAAGTGGAAAGGTTAAGGCAGGTCAAATTATTGCAGCTGCCGGCTTCGGTGCTGGTCTTACGTGGGGTT CAGCTATTATTCGCTGGGGCTGAGAGCTCATCTTTCAGGGAAAATAGAGAAACTCGGGGGCAAGTTCAGCTGTCCAAATACGTTTTTAGAAATGGGGTTT TGGGAGGTTGCAGTGTGAGAACAATAACATGCAGCACTCCCTCAACTTTCTATTTTTGGTCTTCATTTTCTTAGTCTTTTTTGTCTTCTTTTCTCAAGTA CCAATTTTCTTTCTCCTGATAGATATATTTGTCATTCAGATTGATTCTAAAAGAGGCTTCTATTTATGTTTGTCAACAGTACTTGTAATTTTAATGCAGC ATGTGAAAGTGTATGCATGCTTGAACTCAAATAGCAATATTGGTAACAAGCAGTGACTTAATTTAATTTATGGGTTTCTTATTTGTTTAAAAAA
• Tissue: pods
• Gene name: LI_gene_165015;
• Additional information: details;

Expression of Ll_transcript_437416

FPKM

• PAB: 0.8
• PNAB: 0.2
• PS1: 0.5
• PS2: 0
• PS3: 0.6
• PW1: 0.3
• PW2: 0.6
• PW3: 0.6

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_437416

• Blastp: 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic from Arabidopsis with 72.37% of identity
• Blastx: 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplastic from Arabidopsis with 72.37% of identity
• Eggnog: Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids (By similarity)(COG0332)
• Kegg: Link to kegg annotations (AT1G62640)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019436161.1)
• Pfam: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (PF08545.9)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;