Ll_transcript_435871

• Id Trinity: TRINITY_DN48948_c2_g1_i18
• Name Transcript: Ll_transcript_435871
• Sequence: AAGCAGCAACAACATCTACATAGGTTTGCATCTTGTTTCTTCTTTACATGTTAGTGGTTGGATTTTCGTGTAGTTTAGATAGTTTTATAGGACAATTTTG CCACTTGCTGGAACTGTGGTTTTCAAGAATTTAATTGGACAAAAGTTTGTGGCTTTGCTTTTTAGCCTGTGTTTTCAACTCGGGTTTTTATTGAAGGGAG TTTAATAGTTCAGTGAAGGATTAGTATTTGAGAAATTGGAAGTCAATAAGGAAAAGAATCAGCTTAGCAAGAAGGTAGCTAGAAGGGAAGGATTAGTTTA ATCATGTCTTTGACATTATTGTGGATTGTCTCCTCCCCTGGCTTAGAGGTCTCCAATTCCGCCGGGTTGTTTGATTCTATCCGAAATGCGAAACTTTTAG GTTCTTCCAAGTCTATCTCTCATGATTTGGGGTCAATTAGAGCGAAGCAGGACAAGAAAAAGAGATGGCGATTTTGCTCTTTGAGTGCGGATACAAATTA TGCTTGTGTTGGTCAATCTGGATTACACGGTTCTATCAACTTCCCTCTTCTGTCAAATGTGCTTGCAAACCCAGCCGCAGGAGAAGCCGCTGTTTCATCG GAGCAGAAGGTTTACGATGTGGTGTTGAAGCAGGCATCTTTGGTTAAGAGGAAGCTCGGCTCTACTGGTGAAATTGAAGTGAAACCGGAAATTGCTCTTC CTGGGAATTTGAGCTTGTTGAGTGAAGCTTATGACCGATGTGGAGAAGTTTGTGCAGAATATGCTAAAACATTTTACCTTGGAACTCTCTTAATGACCCC GGAAAGGAAAAGAGCTATCTGGGCAATATATGTGTGGTGTCGGAGAACAGATGAGCTTGTTGATGGCCCTAATGCTTCACATATTACACCAACTGCTTTG GATAGGTGGGAATCAAGATTGGATGAACTTTTCCAGGGTCGTCCATTTGATATGCTTGATGCGGCTTTATCAGATACAGTCCGCAAGTTTCCTGTTGATA TCCAGGTATGGATTGATTTTTTTGACCAAGACCAACTGACCTGTTTGATACTTAGTTCGGGTTCAGTCATAACAATGTTCAAGCTCCAGCTGTTGGGGAA CAAAATATGCAACTAGCTTCATAGTTGATTGTGATACCCAGTTAATAAGCCACAGATAGACTTATTACGTAGATCCAGAGAGTGATGAACACAGACTCAT TTCTTGCGCCAAATGAGTGGACATGCAAGACAAAAATGGACTAATAACGAATGCACTAGACTATGAGTAGGGGTAACACCTATCATGGAAAAGATTGTAG AATCTCACTTTAGATTGTCTGGCCACGTGTGTAGCGTAAATTAGGTGGAGAGTAAGAAACGGTACAGGTAAAACCATTAAAAGGACAGATTTAAATGGCC TTTCTGAAGACGCCGTCTTTCTTGTGCCCATATCATGATTTTGTGAAACCAATTCCGTAATATATTCACATTCAATGTTAGAGGACTAATGTTCCAAATC TTTGTGTCCATGCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATATAAAAACTTTGACGAACTATATCTCTATTGTT ACTATGTTGCTGGGACAGTTGGTTTGATGAGTGTTCCAATCATGGGCATTTCACAGTATTCACAAGCAACCACAGAGAGTGTGTACAATGCTGCCTTGTT CCTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGATGCTAACAGAGGAAGAGTGTATCTACCACAAGATGAGTTGTCTCTAGCA GGGCTTTCAGACGACGACATATTTGCTGGTAAGGTGACAGACAAATGGAGGTACTTCATGAAGGGCCAAATTAAAAGGGCAAGAATGTTTTTTGATGAGG CAGAAAAAGGAGTGACAGAGCTTAACGAAGCTAGCAGATGGCCGGTATGGGCGTCGTTGCTGCTATATCGGCAGATATTGGACGAGATCGAAGCTAATGA TTACAACAATTTCACTAAGAGGGCTTATGTAGGCAAAGCCAAGAAGTTACTTTCTTTACCAATTGCCTATGCAAGATCTCTGGTTCCTCCATCAAGAAAA GTATCTGCTGCAATAAAGGCATAGATCTCATACCATATAAACTTCTGTAGAACAATGTGCAATGGAAAAAGAGAGTAGAAATGCATAATCTGTATATTAT AAAGTATTAAGGCATTCATTATCCACTTATTGTAGTTGATATTACTTTTTGCCATTTGCTTTGTTCTTTAATCTACACGGTTTTTTGTTTCAAGAAATGT TTTCTATTTCCTATTTTCGTTTTCAAAAAATAATTTCCATTTTGATGTTTTCATTTCCTCA
• Tissue: pods
• Gene name: LI_gene_165307;
• Additional information: details;

Expression of Ll_transcript_435871

FPKM

• PAB: 74.8
• PNAB: 0.9
• PS1: 1
• PS2: 0
• PS3: 0.3
• PW1: 5.9
• PW2: 12.6
• PW3: 8.8

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_435871

• Blastp: Phytoene synthase, chloroplastic from Cucumis with 63.39% of identity
• Blastx: Phytoene synthase 1, chloroplastic from Lycopersicon with 84.08% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0001867)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019432581.1)
• Pfam: Squalene/phytoene synthase (PF00494.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;