Ll_transcript_435873

• Id Trinity: TRINITY_DN48948_c2_g1_i20
• Name Transcript: Ll_transcript_435873
• Sequence: ATGATATTGATTTATTTACATGCCAAATTATGTCCATTGAGAAACTCATTTTTTTGTATAATCAACCTCATATTATTTGGCATCGACAATGTTGATGTTG ATGTTGATGCATTCAGTCACATGTTCAATTAATGGGAAGAGTTTCTTATAACTGCGTTCAAGGTTCAGTAACACCCAAATAGATAGCTTTAGTGGAATTC CCACTTGCTGGAACTGTGGTTTTGAAGACATTAATTGAACAAAAGGCTGTTGTTTTGCCTGTGTTTTCAACTAGGATTTTAACTCAAGGCAGTTTAATAG TTCTGTGAAGGATTAGTGTTTGAGAATTTGGAAGTCAAGAAGGAAAAGAATCAGCTTTGCAAGCAGAAAGCTAGAAGGAAAGGATTAGTTTGATCATCAA TTCATCATGTCTGTAACATTATTAAGGACTGTCTTAGAGGTCTCCAGTTCTGCCAGGTTGTTCGACTCCATCCGAAATGCAAAGCTTTTAGGTTCTTCGA AGTTTATGTCACGAGATATGGGGTCAATTAGAGCAAAGCAGGATAAGAAAAAGAGACGGCGATTTTGCTCTTTGAGTGTGAATACAAATTATGCATGTGT TGGTCAGCCTGGCTTAGAAGGTGCAGGCAACTTCCCTCTTCTGTCAAATGTGCTCATAAACCCAGCTGCAGGAGAAGTCGTTGTTTCATCAGAGCAGAAG GTCTACGATGTGGTGTTGAAGCAGGCATCTTTGGTTAAGAGGAAGCTGGGCTCTACTGATGAACTGGAAGTGAAACCAGATATTGCTCTTCCTGGGAATT TGAGCTTGTTGAGTGAAGCTTATGACCGGTGTGGACAAGTTTGTGCGGAATATGCTAAAACATTTTACCTTGGAACTCTCTTAATGACTCCTGAAAGGCG AAGGGCTATCTGGGCAATATATGTGTGGTGTCGGAGAACAGATGAGCTTGTTGATGGCCCTAATGCTTCACACATTACACCAACTGCTCTGGATAGATGG GAATCAAGATTGGATGATCTTTTCCAGGGTCGTCCATTTGATATGCTTGATGCGGCTTTATCAGATACAGTCCGCAAGTTTCCTGTTGATATCCAGGTAT GGATTGATTTTGTTGCTCGAAAAAAATTTGCAACTTCGATTTTCTCTTCAAGATATCACTACTTGTGTAGAGAGTGAGCTTCGGCAACCAGAAGCTTGCT TGCCTTGTGAAGTGGAGGCGATGAGTTCACAACTACCTTTTGGCTTGTGAGGGTAAGGTTGTTTACATTTACCTCCCAAGACCACAAGTAGGTGTGAGTC TCGTGCACTAGGTCGCCCTTTTTATATTGCTACTTGTCTATTTTATAAAGATCCTGTAAGCCAACAACATCACAAGTTCAGTGTTTCAGAGATTTTACGT GAGTGAACAAATAAGAGAAAATGGAATTAATAATGATGCATTAGAGTGAAAGAAGGAGCATTATAAGACCATTAGATGCAAGAAGAGTAAATTAGGTGGA GGTTGAGAAAAAGTAGAGGTGAAACCATTAACAAGAATTTAAATGGCCTTTCTGAAGACATGCAAAGAGGCTCCTTCTTGTGCACATATCACGATTTTGT GACACCAATTATGTTTTTTGTCACCTTAAATGTTAGAGGACTTATTTTCCAAATATTTTCAATTTGTGTCCATGCAGCCATTTAAAGATATGATAGAAGG AATGAGAATGGATCTTAAGAAGTCGAGATACAAAAACTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGGACAGTTGCTTTGATGAGTGTTCCA ATAATGGGCATTTCACCGTATTCAGAAGCCACCACAGAGAGTGTGTACAATGCTGCCTTGGCCCTGGGAATTGCAAATCAGCTAACCAACATACTCAGAG ATGTTGGAGAGGACGCTAACAGAGGAAGGGTGTATCTACCACAAGATGAGTTGGCTCTGGCCGGGCTTTCGGATGACGACATTTTTGCTGGTAAGGTGAC AGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCAAGAATGTTTTTCAATGAAGCCGAAAAGGGAGTTGTGGAGCTTAACGAGGCTAGCAGA TGGCCGGTATGGGCGTCGCTGCTATTGTATCGGCAGATATTGGATGAGATGGAAGCTAATGACTACAACAATTTCACTAAGAGGGCTTATGTGGGCAAAG CCAAGAAGCTTCTTTCTTTACCAATTGCCTATGCCAGATCTATGGTTCCTCCACCAAGAACAGTATCTTCTGCAATGAAGGCATAGATCCTACACCATAT AAAAAAGCAAAATTTGTATATTATCAAATACTAAGGCATTCATTATGTGGTCATTGTTGTTGATATTAGTTTTTGACATTTTTGGTTTTTCTTTAATCTA TTACATACAGTTTGAGAGATTATTCAGTTTTCTTTCTTTCTTTTTAGAGTATAGTAAGGAGTTGTTAGTTGTATTCAATAAGTGATTTTAAATTGTGACA CAAGTTATGGACATGTAATCCGTTCAATGTAACAACGAAGTAAAGTGATTTTAAATTGTGACAAGTTATTTTTTGCAAATGAAAATAAGTTGGACAGTTC TATCAAAAAA
• Tissue: pods
• Gene name: LI_gene_165307;
• Additional information: details;

Expression of Ll_transcript_435873

FPKM

• PAB: 1.5
• PNAB: 3.5
• PS1: 3.1
• PS2: 1.8
• PS3: 1.9
• PW1: 4
• PW2: 1.1
• PW3: 2

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_435873

• Blastp: Phytoene synthase, chloroplastic from Cucumis with 61.16% of identity
• Blastx: Phytoene synthase 1, chloroplastic from Lycopersicon with 83.58% of identity
• Eggnog: -
• Kegg: -
• CantataDB: Link to cantataDB annotations (CNT0001867)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019460948.1)
• Pfam: Squalene/phytoene synthase (PF00494.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;