| Id Trinity | TRINITY_DN48948_c2_g1_i26 |
|---|---|
| Name Transcript | Ll_transcript_435882 |
| Sequence | ATGATATTGATTTATTTACATGCCAAATTATGTCCATTGAGAAACTCATTTTTTTGTATAATCAACCTCATATTATTTGGCATCGACAATGTTGATGTTG ATGTTGATGCATTCAGTCACATGTTCAATTAATGGGAAGAGTTTCTTATAACTGCGTTCAAGGTTCAGTAACACCCAAATAGGTCTGCATCTCGTTTCTT CCTTACATGCTAGTGATTGGATTTTCGTGTAGCATAGATAGCTTTAGTGGAATTCCCACTTGCTGGAACTGTGGTTTTGAAGACATTAATTGAACAAAAG GCTGTTGTTTTGCCTGTGTTTTCAACTAGGATTTTAACTCAAGGCAGTTTAATAGTTCTGTGAAGGATTAGTGTTTGAGAATTTGGAAGTCAAGAAGGAA AAGAATCAGCTTTGCAAGCAGAAAGCTAGAAGGAAAGGATTAGTTTGATCATCAATTCATCATGTCTGTAACATTATTAAGGACTGTCTTAGAGGTCTCC AGTTCTGCCAGGTTGTTCGACTCCATCCGAAATGCAAAGCTTTTAGGTTCTTCGAAGTTTATGTCACGAGATATGGGGTCAATTAGAGCAAAGCAGGATA AGAAAAAGAGACGGCGATTTTGCTCTTTGAGTGTGAATACAAATTATGCATGTGTTGGTCAGCCTGGCTTAGAAGGTGCAGGCAACTTCCCTCTTCTGTC AAATGTGCTCATAAACCCAGCTGCAGGAGAAGTCGTTGTTTCATCAGAGCAGAAGGTCTACGATGTGGTGTTGAAGCAGGCATCTTTGGTTAAGAGGAAG CTGGGCTCTACTGATGAACTGGAAGTGAAACCAGATATTGCTCTTCCTGGGAATTTGAGCTTGTTGAGTGAAGCTTATGACCGGTGTGGACAAGTTTGTG CGGAATATGCTAAAACATTTTACCTTGGAACTCTCTTAATGACTCCTGAAAGGCGAAGGGCTATCTGGGCAATATATGTGTGGTGTCGGAGAACAGATGA GCTTGTTGATGGCCCTAATGCTTCACACATTACACCAACTGCTCTGGATAGATGGGAATCAAGATTGGATGATCTTTTCCAGGGTCGTCCATTTGATATG CTTGATGCGGCTTTATCAGATACAGTCCGCAAGTTTCCTGTTGATATCCAGGTATGGATTGATTTTGTTGCTCGAAAAAAATTTGCAACTTCGATTTTCT CTTCAAGATATCACTACTTGTGTAGAGAGTGAGCTTCGGCAACCAGAAGCTTGCTTGCCTTGTGAAGTGGAGGCGATGAGTTCACAACTACCTTTTGGCT TGTGAGGGTAAGGTTGTTTACATTTACCTCCCAAGACCACAAGTAGGTGTGAGTCTCGTGCACTAGGTCGCCCTTTTTATATTGCTACTTGTCTATTTTA TAAAGATCCTGTAAGCCAACAACATCACAAGTTCAGTGTTTCAGAGATTTTACGTGAGTGAACAAATAAGAGAAAATGGAATTAATAATGATGCATTAGA GTGAAAGAAGGAGCATTATAAGACCATTAGATGCAAGAAGAGTAAATTAGGTGGAGGTTGAGAAAAAGTAGAGGTGAAACCATTAACAAGAATTTAAATG GCCTTTCTGAAGACATGCAAAGAGGCTCCTTCTTGTGCACATATCACGATTTTGTGACACCAATTATGTTTTTTGTCACCTTAAATGTTAGAGGACTTAT TTTCCAAATATTTTCAATTTGTGTCCATGCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAACTTTGATGA ACTATATCTCTACTGTTACTATGTTGCTGGGACAGTTGCTTTGATGAGTGTTCCAATAATGGGCATTTCACCGTATTCAGAAGCCACCACAGAGAGTGTG TACAATGCTGCCTTGGCCCTGGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGACGCTAACAGAGGAAGGGTGTATCTACCACAAG ATGAGTTGGCTCTGGCCGGGCTTTCGGATGACGACATTTTTGCTGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCAAG AATGTTTTTCAATGAAGCCGAAAAGGGAGTTGTGGAGCTTAACGAGGCTAGCAGATGGCCGGTAAGAACACAAACTTTTATCACCGTCCTAAACCTTTTC TGTGCTTGAAATTTAATATGGACACACATGCAAACTTTTATCATTATTTGATTAAAATCTTTGCTGCACAATGACATATTGTTGGTTACTCTAAGAGATA ACCAAAGTTACCAAAGTTTGTAATCAGTATAAGAGAAGTTATTTATTTGTTAAACTTAAAATGCTCTTATGTGTGTACTTATAAGTTTATGGTGTGGAAA ATGCTCTTATGTGCCTATTTTGGGTCTTTCTGATACCATTTTAGTTCACATTTTTTAACCTTCACATGTGAACTGAAAAAGGGTGTTGTGGATGTTGAAA CTTGCAGGTATGGGCGTCGCTGCTATTGTATCGGCAGATATTGGATGAGATGGAAGCTAATGACTACAACAATTTCACTAAGAGGGCTTATGT BLAST |
| Tissue | pods |
| Gene name | LI_gene_165307; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_435882
| Blastp | Phytoene synthase, chloroplastic from Cucumis with 61.16% of identity |
|---|---|
| Blastx | Phytoene synthase, chloroplastic from Arabidopsis with 83.02% of identity |
| Eggnog | - |
| Kegg | - |
| CantataDB | Link to cantataDB annotations (CNT0001867) |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019460948.1) |
| Pfam | Squalene/phytoene synthase (PF00494.18) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |