Ll_transcript_435883

• Id Trinity: TRINITY_DN48948_c2_g2_i7
• Name Transcript: Ll_transcript_435883
• Sequence: TGTAGCTAAGGTGAGAATATTCCAATCACATTTTTCTTAAAAACCAATCCCAACTCACTTCTATAATCTCAAACTTACACACCCTCTCTCTCTCTTTGTG GTGTGTTGTTTATTTCACTTCTATAGCTATTCCAAACTGCACCAAGTACATTGGAAATTGTACTACTCTTGAGTCTTGAGATGTCAAGTCTTCTTCTGAG GGTGAGTTTTGGACCAATAGAAGACACCAACTCCTTGTTGGGTTTTGCATGCAGAAGTCATATTATTGAAAGAACCCAAAGAAGGTTGAAAGGAGTCACT TTTGCAAATAAGGCTGTTGCTTTATCAAGTGCTGTAGTAGCAAACCCAGTAATATCTTCAGAGGAGAAGGTCTATGAAGTGGTGCTTAAGCAAGCAGCTT TGGTTAAAGAAAGGAATAGGGATGCAAAGATAGCCTTGGATTTGGATAGTAAGCCACTGGAAAATGCTGAATTCAGCAATGGGAATTTGTTGAATTTGGC TTATGATCGATGTGGTGAAGTTTGTGCTGAGTATGCTAAGACATTTTATCTTGGTACTTCTTTCTCTATCTCTTCTTCTTTTCCAACTTCTCTCATTCAT TGTCCCTCTCTCAAATGAGTTTAGTGGAATTTGGCTTAAATTTCTCTCAACTTATCAAATATCCTAATATCAACTTAACCTACAGAAATCTTCCTATTAT ATACTACCATGTACCATTTCATTTATCAGAAATATTCATCTTATCAAAAATATTATATGTTTATCTGACAAGAGAAGTGATAACTAATAGTAATATAGAT TTCTATTGATTATTAATGCCTCATATGTTGACTTATTTTGAGGTGAATAAATTAGTGTAATGGTGTTGTGCACTTGACTTAGAGAAATGATTCTTTACCA TTGATTTGGAATTGAGAATCTGGTTAGACCAGTATCCTTGAACCATGTAATAATTTCGATGCGACTTCTCTTCTAACTGGAAATTGTAGGCACACGATTG ATGACCGAAGAGCGCCGAAGAGCCATCTGGGCAATCTATGTGTGGTGCAGAAGAACTGATGAGCTAGTTGATGGTCCAAATGCTTCATACATCACTCCTT CGGCATTGGACAGGTGGGAGCAACGACTAAACGATGTCTTTCAAGGTCGTCCTTTCGATATGTACGATGCTGCCCTCTCGGACACTGTCACTAGGTACCC TGTAGATATACAGCCTTTCAAGGACATGATAGAAGGGATGAGGATGGACCTGAGAAAGTCGAGATACAATAATTTCGATGAGCTCTACCTTTACTGCTAC TATGTTGCTGGGACAGTGGCTCTTATGAGTGTTCCTGTAATGGGCATAGCTCCTGAATCTAAGGTTTCAACTGAGAGCATTTATAATGCTGCATTGGCAC TAGGCATTGCAAATCAACTTACCAACATACTCAGAGATGTTGGAGAAGATGCTAGGAGAGGCAGAGTATATCTCCCACAGGATGAATTGGCAAAGGCTGG CTTATCCGATGAGGACATTTTCTCTGGGCAGGTAACCGACAAATGGCGGAGTTTCATGAAGGGCCAAATAAAGAGGGCAAGGAAGTTTTTCGATGAAGCA GAGGAGGGAGTTACACAGCTTGATGCAGCTAGCAGATGGCCTGTGTGGTCATCATTGTTGTTGTATAGACAGATCTTAGATGCTATTGAAGCCAATGATT ATAATAACTTCACAAAAAGGGCTTATGTTGGAAAAACAAAGAAGCTATTATCACTACCTGCTGCTTATGTTCAAAAAGCCAACATCTTAAGCAACAAGCC ATGGACTTCACCTTTTCCTCACTCTATGGC
• Tissue: pods
• Gene name: LI_gene_165308;
• Additional information: details;

Expression of Ll_transcript_435883

FPKM

• PAB: 2
• PNAB: 0.4
• PS1: 1.8
• PS2: 3.6
• PS3: 8.2
• PW1: 0.1
• PW2: 0.2
• PW3: 0.3

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_435883

• Blastp: Phytoene synthase 1, chloroplastic from Lycopersicon with 84.88% of identity
• Blastx: Phytoene synthase 1, chloroplastic from Lycopersicon with 84.41% of identity
• Eggnog: phytoene synthase(COG1562)
• Kegg: Link to kegg annotations (543988)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019435350.1)
• Pfam: Squalene/phytoene synthase (PF00494.18)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;