Ll_transcript_436562

• Id Trinity: TRINITY_DN48949_c0_g1_i15
• Name Transcript: Ll_transcript_436562
• Sequence: CAGCAAATACCTTAAACTCTCCGACTACAGAACACATCATCAAACATCACACATCACACATCATTACACATCACATATTAGACGTGTTAGTGTGGTAGGT CGCAAGTGAGTTCTAAATAGTAGATATACTAATTCTAGTAATTGTGTTTTCAGCACAACTTCGTAATTGACGGTGACATTGTTCAGTGTTCTAGTTTTTT CCGGTTCAGGAGAATCGTCACTCACTTTTCCTTTTCTCAAAAATTCGAAGAAAGGGGAAAGGAAAAAAAACAATTTTGTCACTCAAACAGAACAAAAAAA CCGAATACTATACATGGATTCATTGCTTCTTGGATCTTTTCCTAAACCATCTTCACTTACTATTGGTGGAAATTTCTGGAGGAGTAAAACTTGTGGCAAG AATTACTATGCAAGTATGTCTCTAACATACCCCTCTCCCTTTTGTCGGTATCGGGATCGATTCATGATATTGTTATGTGGCAATGGGCACCAAATTAGAT CCGATGAATTTAGACTTGCAAACTCTTGTGTCATAGCAAAGCAAAGAAAAAGGAACATCATGGAAAATACGGAGAGGAAAATCATGGGACAAACTAGGAA CAGTATTTCACTATATGCAGTATAATTATAATATATTTTCCACATTTTTTTCACACCAAGAGGTACAGATATAGTATTTATGAGAGAGCTCTTATTCAAA TACCAGAACTTCACATACATATATTTTGACACCCTACACTATTCAGTATTTACTCACTCTATTTTTCATCCACTTCGGAGGCTACATTTCCTCTCAAACA CAGAGTCATAGAGACTTATATTATGCTCTGCTTCAACTGAAGAATTCAGCTTTATAGTGCTCCAAAGCTGTGTGAATGCATGCAAAATTTCAGCCAATGA AAGTTTTGCAGCAATGCCTATGTCTTAGGAGTTAGAACTTTCCAATTTCCTTCCTGAAACCAAAGTTATTGTGTTGCATTAAATGTCTTGTACTCTTGTC TGATGGAATTTTTTTTGTCTTTTCTTTGACAATAAGTACATATGGCTGGACCCCACATATTTTACTTTATTGTTTTCTGCAACTACTTGAGCATCTCAAT CTTAGTATCTTACATTGTTTTCTGTCATATCATACTCACTTCATATTATGTTGCAGTCTAAGTAGTTGAAATTACTTTCTGTTAGTAACCTGTCTAATAT TGTTTGCTGTTAATTTGGAACTTGCCAATTCCCTTCCCTTTCATCATCCCATTTTCATGCCCAAGATTTGGTTACTATTGTTCTTGTTCTTCACACACCT TTGTTAACTCTTAATTCTTAAATTTTATACACCTTGACATTTTTTGTAAAAGAAATCACTTTTACCCTTTATGGGCAGCACAACATAAGCAACATAGTGT AGCTTAACTTCATAAGACCTTGGAGTTGATTCTGATATGTTATGGCAAGTGACACCCAGACTTTGAAATGTGATAAAATAAAGAAATCGTTTTTGCCTCA CAGTAGTACACTAACAGGAAATGTTGAAAAATTCTCGGTGGTGGTACAAGCATGGTTGCATTATAATTCTTCCCCTGTGATGAAAAAGGTTGTCGATGAT CCAAACTATTGCATTATCAATTGGTAACAAGCATGCTTTGTGGTGTTAATTGCGGCGGGGCTACATTTTTCGTCATTTGAGGAGTGAGCATTGATGATAA TGATCTCAATCAGTTGACCATCTGATGTGTATCTATATATTTAGAACAATATATGTCTTGGTAGAGTAGCAATCTGCGCAATTTCCTGAAATTTGGATAT TGATTATTACTTTTCCCTATAGATTTTTCTGCAGTTATTTTCATTCTAAAGGAAGAGAGAATCTAATTTTTGTTCTTCAAAACGCCACTGCTAGTCTGGT ACTAAATGCAACATTTGGTGCTCTTTAGGTTCTCATGCACCAACAGCTTCATGGCACAAAAGAAAGATCCAAAAAGAACATAATTTTTTGAGGTTTAAGC AGCTAAGTTTGAATCATACTTACAAAGGCATTAAGGGTGGGTGTACAAGTCAAGAATGCAGTAGAAAATATGTTGTGAAAGCGGCCTCTGAACAATCTTT TGAATCTGAATCTAGAGGTTTAGATCCAAAAAACATCTGGGACTCTGTCAAAAATTCCTTGGATGTTTTCTACAGGTTTTCCAGGCCACACACGGTTATC GGCACAGTTAAGTCAAAGCTTTTCTGGAATAACTCTTGGAACTAATGCCCGAATCTTATGGCATTAAGCATAATTTCTGTGTCTCTCTTAGCAGTGGAGA AAGCATCAGATTTATCTCCACTATTTTTTACTGGCGTTATGGAGGCTGTTGTAGCTGCCCTGTTTATGAATATTTATATTGTTGGTTTGAATCAGTTATA TGATGTTGAAATAGACAAGGTAAGAAAGTCGGTAATAGAAATAAATGATCTGAATAGCTAATAAATTTGTTGGTCGTCTTTGAGCTTCTGGATTATTCGA GCAGAAAGAAAAGATGAAAGAGGCAGAATTGCTGTATGGATCAATGGAATTACTAAAATTGGCTATTCAGATACCTATGCAGACTATGTTTTATACAAAC ATCTTTGTGCTCACATGGACAACCTATTGTAGCCTCTGATTTAGTAAAAAAAACAAGCAACACTGAGGAAATATCATAGGGGTTGGCTTATTATTGACCT GTGCTACATGTTTTACTGCAGGTAAACAAGCCATATCTTCCATTGGCATCCGGGGAATATTCCTTTCATACTGGTGTCCTCATTGTTGCGTCTTTTTCGA TTATGAGTTTTTGGCTTGGCTGGGTTGTAGGTTCGTGGCCATTGTTTTGGGCTCTCTTCATCAGTTTTGTGTTAGGGACTGCTTATTCAATTGATGTGCC CTTATTGAGATGGAAAAGATTTGCGGTGCTTGCAGCAATGTGCATTCTGGCTATTCGAGCAGTAGTAGTTCAACTTGCATTTTTCCTTCACATGCAGACT TATGTATACAAGAGGCCAGCTGTTTTCTCAAGACCGCTCATTTTCGCAACTGCATTCATGAGCTTCTTTTCTGTAGTTATAGCATTGTTCAAGGACATAC CTGACATTGAGGGAGATAAAATATTTGACATCCAATCATTTTCAGTACGTTTAGGTCAGAAGAAGGTATTCTGGATTTGTGTATCACTTCTCGAAATGGC TTATGGAGTCGCCCTCCTGATGGGAGCAGCATCGCCTTGTCTATGGAGCAAAATTGTCACGGTAAGTTGCTTATTAAGTGTATAGTTGACTGTTGCAAGT GTGATGTATTCTCCTCCGGCTAAAAGCAGTTATTAGTTGTATACAGCAGTTCTTAGTTCTATAACTACCGGAAGGGGTGGGATTTTTGCTTTATAAAGCA ACTCTTTCTTCTCATGCCGCCTTTTTACTTATATTGGTTAGTTAATATCAACATCTGACTATTGCCTTTCTGTATGCCTCCCGATGTACCGAACTAAGGT GCTCATACACCAATGCTAGTTTGGCTTTGAGTTTACTGGAATAAAGAAATATCTTCTAGTAAAGCTTTTTCTGTTGCATAGAACAGCCCAACTTTATATC TTCGTGATCTTGATATTTGGTGTCAGATTAAAATTGGTCTTTAAATGTGGCACTTCAGGAGAAAGCTTAGGTCAATAATACATATCGACATGATATGGAA TTTAACTTGTTTGATTTTTACTCTCTGCAAATGTGTTAGTGTGTGGGACATGCAGTTCTGGCTTCGGTTCTATGGTATCGTGCAAAATCTGTAGATTTCA GCCGCAAAGCTTCCATAACAGAATTCTATATGTTTATCTGGAAGCTTTTTTATGCAGAATACTTGCTCATACCTTTAATTAGATGAGGATGCAGCAGAAC TGTTAAGAATTAGTTTTGTTTAGATGGGTCCTGCTGCCTTTATAACAAGTGAGGGTGAGGGCAGTCCTATTTTTTAGCGCAATTTTCATGGTAAACATAT AATATCATTATAAGTTAAAGGATAAACATGTAATTGTCTACTAGAGAGGAGTCTGACTCCT
• Tissue: pods
• Gene name: LI_gene_165310;
• Additional information: details;

Expression of Ll_transcript_436562

FPKM

• PAB: 0.2
• PNAB: 0.2
• PS1: 0.3
• PS2: 0
• PS3: 0.1
• PW1: 0
• PW2: 0.1
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_436562

• Blastp: Homogentisate phytyltransferase 1, chloroplastic from Arabidopsis with 77.27% of identity
• Blastx: Homogentisate phytyltransferase 1, chloroplastic from Arabidopsis with 78.02% of identity
• Eggnog: Synthesis of 3-octaprenyl-4-hydroxybenzoate (By similarity)(COG0382)
• Kegg: Link to kegg annotations (AT2G18950)
• CantataDB: -
• Mirbase: gma-MIR5761a (MI0019702)
• Ncbi protein: Link to NCBI protein (XP_019454430.1)
• Pfam: UbiA prenyltransferase family (PF01040.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;