| Id Trinity | TRINITY_DN48949_c0_g1_i2 |
|---|---|
| Name Transcript | Ll_transcript_436546 |
| Sequence | CAGCAAATACCTTAAACTCTCCGACTACAGAACACATCATCAAACATCACACATCACACATCATTACACATCACATATTAGACGTGTTAGTGTGGTAGGT CGCAAGTGAGTTCTAAATAGTAGATATACTAATTCTAGTAATTGTGTTTTCAGCACAACTTCGTAATTGACGGTGACATTGTTCAGTGTTCTAGTTTTTT CCGGTTCAGGAGAATCGTCACTCACTTTTCCTTTTCTCAAAAATTCGAAGAAAGGGGAAAGGAAAAAAAACAATTTTGTCACTCAAACAGAACAAAAAAA CCGAATACTATACATGGATTCATTGCTTCTTGGATCTTTTCCTAAACCATCTTCACTTACTATTGGTGGAAATTTCTGGAGGAGTAAAACTTGTGGCAAG AATTACTATGCAAGTTCTCATGCACCAACAGCTTCATGGCACAAAAGAAAGATCCAAAAAGAACATAATTTTTTGAGGTTTAAGCAGCTAAGTTTGAATC ATACTTACAAAGGCATTAAGGGTGGGTGTACAAGTCAAGAATGCAGTAGAAAATATGTTGTGAAAGCGGCCTCTGAACAATCATTTGAGTCTGAACCTCA AGCTTTTGATCCAAAAAGCATTTGGGTCTCAGCCAAAAGTTCCTTGGATGCTTTCTACAGGTTTTCCAGGCCACACACAGTTATCGGCACAGCGTTAAGC ATAATTTCCGTGTCTGTCCTAGCAGTACAGAAAACATCAGATTTGTCTCCACTATTTTTTACTGGAGTGTTGGAGGCTGTGGTAGCTGCCTTGTTTATGA ATATTTATATTGTTGGTTTGAATCAGTTGTCTGATATTGAAATAGACAAGATAAACAAGCCATATCTTCCATTGGCATCTGGAGAATATTCCTTTCAAAC CGGTGTCATTATTGTTGCATCCTTTTCAATTCTGAGTTTTTGGCTTGGGTGGATTGTAGGTTCGTGGCCTTTGTTTTGGGCTCTTTTTGTCAGTTTTTTG CTAGGGACGGCTTATTCAATCAATGTACCCTTGTTGAGATGGAAGAGATTTGCAGTGCTTGCAGCGATGTGCATTCTGGCTGTTCGGGCAGTAATAGTCC AACTTGCATTTTTCCTTCACATTCAGACTCATGTGTACAAGAGGCCAGCTGTCCTTTCAAAGCCGCTCATTTTCGCTACTGCATTCATGAGCTTCTTTTC TGTAGTTATAGCATTGTTCAAGGACATACCTGACATTGAAGGAGATAAAATATTTGGCATCCAATCATTTTCAGTACGCTTAGGTCAGAAGAAGGTATTC TGGATTTGTGTTTTACTTCTCGAAATCGCTTATGGCGTCGCCCTCCTGATGGGAGCAGCATCTCCTTTTCTCTGGAGCAAAATTGTCACGGTGCTAGGAC ACGCCGTTCTGGCATTGGTTCTCTGGTATCGTGCCAAGTCTGTAGATTTGAAGAGCAAAGCTTCCATAACATCCTTCTATATGTTCATTTGGAAGGTAAG ATTACAAAGCCTTTGAGAAATAATCCTCAAATGATTATTAGTCAGAAAAGTAGCTGTATGATTACTTTTCACTTGTTCTGAGAATTAATGGTTGTTTGTG TTGGGTTTATTCAAGTGTGAAGTCTCTCACATTGGATATGTGGGGAAGAGTGGAAGAGTTTATAAGTAGGAAAAACTTATGGAACTAATGCCTTAAGGTT TTAGTTCAAGACGTGGTGTATCACTTGTGGCTCT BLAST |
| Tissue | pods |
| Gene name | LI_gene_165310; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_436546
| Blastp | Homogentisate phytyltransferase 1, chloroplastic from Arabidopsis with 78.15% of identity |
|---|---|
| Blastx | Homogentisate phytyltransferase 1, chloroplastic from Arabidopsis with 78.15% of identity |
| Eggnog | Synthesis of 3-octaprenyl-4-hydroxybenzoate (By similarity)(COG0382) |
| Kegg | Link to kegg annotations (AT2G18950) |
| CantataDB | - |
| Mirbase | gma-MIR5761a (MI0019702) |
| Ncbi protein | Link to NCBI protein (XP_019442394.1) |
| Pfam | UbiA prenyltransferase family (PF01040.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |