Ll_transcript_436915

• Id Trinity: TRINITY_DN48979_c0_g8_i1
• Name Transcript: Ll_transcript_436915
• Sequence: TACTCATCATCAAAATGGTACTGTTGAGAGGAAACATAGGCATATTGTAGAAACTGGATTAGCATTACTTGCTCACAGTTGTTTACCTCTTAAGTTTTGG GATCATGCTTTCCTTACAGCTGTCTATCTCATTAATAGAATGCCTTCACCTAGTTTAACTCACAAATCCCCTCACATCCTTCTATTTCAAACTGCCCCTG ACTACCTTGTCTTAAGGGTCTTTGGTTGCTCATGTTTTCCCCATCTCAGACCCTTTAATCATCATAAACTTGATTTTAGATCTTCTGAGTGTACCTTTTT GGGTTATTCTGTTTCTCATAAAGGGTACAAGTGCTTAACCAGTGAGGGAAAAATTATTGTATCTAAAGATGTTATCTTCAATGAATATAGTTTTCCATAT GCTAAAACTTCTCATATTTCTACCCAGTCTGATTTCTCTAAGTCATCCCCTACAGCTGATTCTACCCCTGCACACCATAACCCCAAACCTGTTTTCTTCC CTGATTACTTTGCACCTAGTCCCTCCTCTTCCAGTCCTGTTTCTCCTAGTCTCTCTGTTCCTTTGTCACCTGTTCCTCCCAATGTCAATGTTGAGTCAAC TGAATCCAGTGAGTCTAAGTCTAGTACCAGTCAGTCTGTTAGTGAGTCAAGTGAGTCTAGTGAGTCTGTTAGTGTTCCCACTGTTCCTGTTTCCTCTCAT CCTATGCAAACTAGGTCTAAGTCAGGAATATCTAAAACCATTCATCCTACAGTTTATTTGGCTCATACTGAACCTACATCCACTAAGGCTGCTTTAGCTG ATCCAATTTGGGTCTCTGCTATGAAAAGTGAATATGATGCTCTTATGCAGTCTGCTACTTGGTCTTTAGTACCTCTGCCTCCTAACAAACATGCCATTGG GTGTAAGTGGGTCTTTAGAATCAAGGAAAATCCAGATGGTTCAGTAAATAAATATAAAGCTAGGTTAGTTGCCAAAGGGTTTCACCAGAAACTTGGAATT GATTATAATGAAACTTTTTCCCCTGTTGTGAAACCTGTTACTATCAGGGTTTTGCTTACTTTGGCTCTAACTCATAACTGGTCTCTTAGACAGTTAGATG TGAACAATGCCTTTTTGAATGGCATTCTAAATGAGGAAGTCTATATGCAACAACCTATGGGGTTTCAAAATAGAGATAAGTCCTTGGTGTGCAAACTGCA CAAGTCCTTATATGGACTTAAGCAAGCTCCTAGGCAGTGGTTTGAGAAGTTGAAAAGTACTCTGTTTTCTCTTGGATTCATGATCAGCAAGTGTGACAAT TCACTTTTCATTCATAAATCTAGCACTTACAGATTGTTTGCATTAGTTTATGTTGATGATATTATCATCACAGGCTCCTCTATTACTCACATCAATGCTC TGGTTGAAAATCTCAGCAATAACTTTGCTTTAAAAGATTTAGGCACTCTTGACTATTTTCTTGGTATTGAGATTAAGAGTCTCAAAGATAAATCAATTCT TCTTTCTCAAACTAAGTACATCAGAGATTTAATTGAAAGAGCAAATATGTCAGGTGCTAAATCTGTAGCTTCACCTATGGTTTCTAATTGCAAACTCACT AAAGAGGGCTCTAATTATGTTGAAAACCCTACTCTATACAGGTCTGTTGTAGGAGCACTTCAATATGCTACTATAACTAGGCCTGATATAGCTTATTCAG TTAATAAAGTGTGCCAGTTCTTATCTGCACCCTTAGAGGAACATTGGATTGCTGTTAAGAGAATATTAAGATACCTTAATGGTACTCAACATCATGGACT TCACCTACAACCTGCTCCCTCCTCTTCTCCTCTGGTTCTCAAAGGTTTTTGTGATGCTGATTGGGCATCAGATTCTGATGACAGAAAGTCCACATCAGGT GCTTGTGTGTTTGTTGGTCCTAACTTAGTGACATGGTGGTCTAAAAAGCAGCAAACTGTGTCTAGGTCAAGTACTGAAGCTGAGTAT
• Tissue: pods
• Gene name: LI_gene_165533;
• Additional information: details;

Expression of Ll_transcript_436915

FPKM

• PAB: 0.3
• PNAB: 1.2
• PS1: 1.3
• PS2: 0.9
• PS3: 1.2
• PW1: 0.7
• PW2: 1
• PW3: 1.5

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_436915

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 37.63% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 43.94% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019414575.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;