Id Trinity | TRINITY_DN48986_c2_g1_i4 |
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Name Transcript | Ll_transcript_435695 |
Sequence | GTTGAATAGTTTGTTGGGGTCACAGTGAGTTTTGTGTTATAAGTCGGAAACGGAGGAAGAGAGGTGGCGTAGATAGATATCGTAGTGTCCTTTCAATTCA TTCAGTTCATTCATCTACTGCGCGTGACAGTCATCAACAATAACAAAAAACTACAAACCTAACTACCAATGGTTAACACACCTGAATCTTCCTCTAATCA CCGTTCTCCGACCAGTGCTCCTCCATTGCCGGCGGCGTCTGGGGACTCCATCAGCCCTAAGCTCCCTCCGCAAACCCTCCCTTCTCCCTGGGCTCAGGTC GTCCGCGGCGGCGACACGGAATCAACCAGTGCTGTCAAAAAATCACCGTCTCTGCCGCCGCCGACTTTATCGCCGTCTTCCTCCTCCTCCGCTCTCCCTC CGGATCAGGCGATTTTATCTGATTCTGTTGAGAAGACTAATTCTAACACTGTTGCTGCTGCTGATAGCTCTTCTTTTGATGCTAATGATGACAATGCTGG TCGTTCCAAGAAACCTGCTTGGAGAAAACCTTCGAACGGCGTCGTTTCTGAGGGTGGTGCTGTAATGGGTGCTGATTCGTGGCCAGCTTTATCTGAATCC ACCAAAGTTTCTGGTAAATTACAACCCGAATCGTCGTCGTCCAAAGCTGCTGCTGAAGGATCATCACTCTCCTCTTCCCAGGCCCCTCTAACTTCACACT CCCCTCAGAAACAGGATAATAGTAATGCAAAACCTAATTCTGCATTGAACTATAATATGCCAAACAAACAAAGATTGATGAAACGGGGAGGTGGCAACAA CATTGGGTCTGGTCCTGCACAGAGCAGCTACTCCAACCATCCCCCACCCCCACCCCCGCCACCCTTTCCGGTATATCAGCTCCATCCAGGTGGCTATGGC ATTCCAGACCATTCTCCAAGAGATCATTACTGGAACAATAGCTGGGGTACAAGACCACCAGCTAGTGGCTTTGCGCCTGCGATGAATGATAATCGGGGTT CTTCTCGCCGGGGTAACTTTGGGCCCCACCCACGCAGAGATGGTTCCTATCATAATAATTATGGCAGCCGGCGTGATCGGGATCGTGGGAATTATGCTAA TAGTGGAGATGCTCATGTACACCAACCACGGATGCCTCCTCCAAGGGGACTACTGAGGCACCCACCACCTAATACTGCTGGATTTATTGGCCCCCAGGCC ATCAGAGGACCGTTTACCAACCATGGTGGTTTCCCAGAGTTATGTTACATTCCAACTCCATTATTCGATTACTTCAAGGGCATGCCGTTCTATACCCACG GTCCTCCTTCGCCATTATTCTTCCCTGCTGCTGAATCTCCTCCGACCAATACGATAGTCAACCAAATTGATTATTACTTTAGTGATGCTAATTTAGTGAA AGATGACTTTTTAAAGTCAAAAATGGATGAACAGGGTTGGGTTCCAGTTGCTTTGATAGCAAACTTCCCTCGAGTAAGTTAATGGTGTTCTATTAAACAG CATTTCCTGCATCTTTTCAGTAGAGACTTTGAATATGTTATACTGTGGCTGTATGATTGAGTGAATCCTTGGCTTACACAAGTTTTTATATGCACTTACT TTTCTGTGTCTCGGCTCTATAAATTGTTGCTTTTGATGCATAGATGACAAGTAAGCTTATTACATTAGAAGAAGTGAGAGTAATTTAGTGGGTTGTACTT GTACTTGGTGCAACTGGGGAGCATTATGTTTTTTCTCATGTTACATCTCCTTGCCTTTTTGCTGTAAACTTGTGGTATTTTTGACATGTCTGCTTTTGTG TCTGTTTCTGCCTTGATAGCTACTTTGATTCTATTTCATCTATAAAGATTTATTTTTCCCTTTAATATTTTTCAATAAATATTTTATCATTGTTGAAGCA ATGCCTGCTGCTACTGGTTGGCGGGAATGAGCAATAGGATGTACTTTATGACTGATTGTTTTGAATCCCGTGCAAGTTTGATATTAGTTGTTTGCAATTT GTAATACTTTCCAAATGATGCTACTATCCTTTTCCAGCCAATTCACTCCCTTTCTGGCAAGCCCATCACTTTGCACCTTCTTCTGTTCTGCATGCAACTT TTCTTTTTTAGTTATCTTTGATGCCGACATGCCTGTTGGCCTTTGTAGTTCTTTTAATCTTGTGTCATGCTATGTATCTTGTTTCTTTATTTTCTTTAAC TTCGTAAGAAAGTCCCCACCCAGGAACTTCTACTCACATTCCTTTTTTGGGCAATTGAGATAATTGTCTCTTCACATCTCCAGCCTCTTCTTAACTACTG TAATGTAACTGACCTATTGGAGGTATGTTTTATAAAAATAATAGTTTGTTTTATCATGATAGAGGCTGTGCCTTTATGCCAGGATGGTTTTGTCTTAGCT ATATACCTTTTAAGTATTAATGTCTAAATGTATTAAGTTTTGTTTATTTTAAGTTTTTAGCATGTAATGTGTTTATTAGAAACTATTTGCATAGTATCTT ACCAATTTTCAGTATAGCAGTGGCTCAGCATTATGCTAATATCAGTTCATCATTCTTTGGAGTTGGCCACTCTGTGCCACTATCCAGGAATTACTATGCT TTTGATATGACTTAAATTTTCATAAATACTACACACCTTGAGTTTGTTTTTGCTCTATGAATTTTTTTTTTTGCAGGTTAGACGTTTAACAAACAGCATT CAAGTGATACTGGACTCAATGAGAGCTTCCACTCTTGTGGAAGTGCAGGGTGACAAGTTAAGGAGGCGTAATGAGTGGAAGACATGGGTGCCCTCTGCAA AGTTTCAGGCTGATTCTGGTTCAATATCTCCTGATGGATCAAGACACAATAACCTAGCAGCTGATTTTCAGACCAAGGCCCTGGAAAATGCAACTAAGGA GGAAGGTCCAATGGAATCTAACAATCATTCTCAACTCCCAAATGGTGATGCTGCAGGGAACAACAATTATTAGAACTCTACTTACATGATGAACCCCACC CGAAAGTTCTGGGTCTTGTCTAGTGTCCAGTATTCAGCCCTGTGGCCCAGGATTTTCAATTTTATATTTTTTAGAGGTGATGGAAACAGAGGCTGTGTGG AAGTTTGATTATTTCTACGGTCATAGCTGGATTTTGATAATGATTTTGAGTTAAGTAGTGGAAACAAATAAAAGTTATTCAGTTTTAAGGTCTAACCGAG ACATAAAAGTGCACCTCAGAATTTTGATTTAAGTAAATTTAATGAGGTTATTAATTTGTATATGTATTTGCTGGGGTTTGTTTATTTTTTTTTCTTTGTT TCATAACCTCTTACAACACCTTGTTCTGGGGGGAGCAGATGATTTGTTGTCCCACACATGTCTGACATTTCACT BLAST |
Tissue | pods |
Gene name | LI_gene_165590; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_435695
Blastp | La-related protein 1C from Arabidopsis with 31.21% of identity |
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Blastx | La-related protein 1C from Arabidopsis with 28.14% of identity |
Eggnog | La ribonucleoprotein domain family member(COG5193) |
Kegg | Link to kegg annotations (AT4G35890) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019436784.1) |
Pfam | La domain (PF05383.16) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |