Ll_transcript_330392

• Id Trinity: TRINITY_DN49000_c7_g1_i9
• Name Transcript: Ll_transcript_330392
• Sequence: GAAAACTACAACTGAGCAATAATTCCTTCTTCGTATTACAGGCGATAAGGTAGATATTTGTTTTCTCATATTTTCACATATAGCCGATTCCGTATTCCGA GTCAACTCAAAAACCTCTCTAGAAACCCAACCTAACACAACACAAGTACTTGAACTAGTTTCGTTCAACACTCTTATCTCTCAAACCTTATACCTCCACC CATGTCTATTCTTTCAACCCCAATTACTCTCACAACCAATACCTTACTCCTTCATTCTCAATCCCAACAAACCAAAACCCAAACCGTTGTTTTTACCAGA AGAACAAGAACTTCAACCATTACAGCATGTTCCGCTTCAGAGAACCCGCAACAGAAGCAGAAATCGGAGAACAAGGCCAAGAACAATAAGAACATTTCTG ATGAAGAAACGGGTATTAACCCAGTTGGGTTTCTTGTCAAGCGTGGCATTACCCATAAAGTATTTGGCCAGTTCCTGCGTGAAAGGCATAAAGCATTGAA GGATCTGGAAGATGAAATTTTCAATCGGCACGTCAACCTTAAGGATATGTCTACTGGATATGAGTTATTGGGTATGCATCGTCATCCAGAACACCGGGCA GATTATATGGAATGGGCTCCAGGGGCTCGCTACTGTGCAATTATTGGTGACTTCAATGGGTGGTCACCTACCGAAAATTGTGCCAGAGAGGGTCGCTTTG GTCATGATGATTATGGATACTGGTTTATCATTCTTCAAGACAAGCTGAGAGAGGGAGAGAAGCCAGATGAACTCTATTTTCAACGGTACAACTACTTAGA TGATTATGATAAAGGGGACAGTGGTGTCACCATTGAAGAGCTATTTAAGAAATCAAATGATGAGTACTGGCTACCGGGAGAAGATCGTTATCTAAACAAC CGTTTTGAAGGACCAGCAAAGTTATATGAGGAGATATTTGGTCCTAATGGACCACAAACTTTGGAGGACTTGCCAGACTTACCAGATGCAGAATCAAGAT ATAAAGAATGGGCCGCAGAACATGGACCTTCCCGTTATGCTGTGATTGATAATGATGACAAGAAGTTTGACATATTTAATTTTGTAGTTGATCCCGAATG GCGAGAGAGAATTCGTAAACTGAAACCTCCTTTAGCATACTGGAATGAGTCACGTAAAGGTAGGAAGGCATGGTTGAAAAAGTATATTCCTACCATTCCT CATGGCAGCAAGTACAGGGTCTACTTTAACACTCCTAACGGGCCATTGGAACGAGTACCTGCTTGGGCTACATATGTGCAGCCAGAAACAGATGGAATGC AAGCTTATGCGATCCACTGGGATCCACCACCTGAGCATGCATACAAACGGAAACATGCAAGCCCTAAAGTACCAAATTCCCTGCGTATATACGAAGCTCA TGTTGGAATTAGTGGATCTGAGCCAAAAATATCCTCATTCAATGATTTCACTGACAAGGTTCTTCCTCACATAAAGGTAGCTGGATACAATGCAATCCAG TTGATCGGAGTTGTCGAACACAAGGATTATTTCACTGTTGGGTATAGAGTTACCAATTTTTACGCAGTTAGTAGTCGATATGGCACTCCTGATGACTTCA AGCGATTAGTTGATGAGGCACATGGACTTGGACTGCTGGTCTTCTTAGAAATTGTCCATTCATATGCAGCTGCAGATGAGATGGTTGGATTATCGATGTT TGATGGATCAAATGACTGTTATTTTCATTCTGGTAAACGAGGGCATCACAAATTCTGGGGCACCAGAATGTTCAAATATGGCGACCTTGATGTTCTGCAT TTCCTTCTCTCAAACTTGAACTGGTGGGTTGAGGAGTATCAGATTGATGGGTTTAGGTTCCATTCTGTTTCATCTATGATATACAGTCACAATGGTTTTG CTACTTTTACTGGTGACTTGGAGGAGTACTGCAACCAATATGTCGACAAGGATGCACTGTTATATCTTATCTTAGCCAATGAGATACTACATTTTTTTTA CCCAAATATTATCACAATAGCAGAAGATGCAACATTTTATCCTGGATTATGTGAGCCAGTTTCTCAAGGTGGATTGGGCTTTGATTATTATGTCAACCTT TCTGTGTCTGAGATGTGGTCAACTTTTCTTGAGAGTGTTCCTGATAACGAATGGAGTATGACTAAGATTGTTAACACATTAGTTTCAAATAGAGAATATG CTGATAAGATGCTTACATATGCTGAAAATTATAACCAGTCCATATCTAGAAGGCGGTCATTTGCAGAAATATTGTTTGGTGAACTAGATGAGCATTCACA CCACTATAAGGAATCTTTGTTGACGGGATCTTCATTACATAAAATGATCAGATTGATCACGTTAACAATTGGCGGTCGTGCCTATCTGAACTTCATGGGC AATGAATTTGGGCATCCCAAGGGAGTTGAGTTTCCAGCATCAAGCAACAACTTCTCATATTCGCTTGCTAATCGCCAGTGGGATCTTTTGGGAAAAGAAG TGAACCATGATTTGTTTTCCTTTGATAAGGACATGATGAAGCTTGATAAAAAAGAGAGAGTGCTTTCGCGTGGTTTTCCAAACGTTCACCATGTGAATGA CAGTTCAATGGTCATATCTTACATCAGAGGCCCCCTTCTGTTCATTTTCAATTTTCATCCAACCGATTCTTATGATAGTTACAGAATAGGTGTAGAAGAA GCTGGGGAGTATCAAATTATTCTGAACACAGATGAAATAAAATATGGAGGTCGGGGGAGCATTAAAGAAGACCAGTATCTTCAAAGAACTGTCAACAGAA GGGTTGATGGACTTCGAACCTGCTTAGAGGTCCCACTGCCTAGCAGAACTGCTCAGGTTTACAAGTTAAAGCGGATTTTGAGAATATGAGGCAACGCTGC ATCTGCCGAGTAATATAAGCCAGTACTTGATCACTTTTTTTTTTCATACACGGAACGATGTAATGGAAGGAAAGGTGCATAATGTCCTCAGCATACCATT ACCTACCTGTTAGTTATTGAAATCACAGAAGCAGCAACAGCAAGGGGCAAGAAGCAACAAACAGTGGCATTTGCAGCAGTACCTTTAGCATCAAGTATTT TAGTTGGAGTTCATTTAATTAGTTGTTAACCGTTTGTGTTAGTTTTGCTAACTTATCTTTACTCAGAAGCTTCATGCCATCAAGTATATATATAAAGGCA AAGTTTACTTGTAATTAGCATTGGTTGAAAGTAGAATGGAATACACAAATTACTCTTCCTATTCCTTATTCTTCCTTTCCTCTAAATTGTAAGATGGTAT CATAGCTGTCAAGCTCTGATTCATATTCTCTTTTGTTCCTTCTTGTTTTCTTTGTTGATCAACATCTACTTCTTTCTTCTTCAAAGACTGTTCTATGTTT TTGAATATGGCGAATTAGAGCGCTGAAAACTTTAACATTAATCCTTCTAATCCCC
• Tissue: pods
• Gene name: LI_gene_165708;
• Additional information: details;

Expression of Ll_transcript_330392

FPKM

• PAB: 0.2
• PNAB: 3.2
• PS1: 3
• PS2: 3.9
• PS3: 5.3
• PW1: 2.8
• PW2: 1.7
• PW3: 1.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_330392

• Blastp: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic from Arabidopsis with 70.68% of identity
• Blastx: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic from Arabidopsis with 72.47% of identity
• Eggnog: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position (By similarity)(COG0296)
• Kegg: Link to kegg annotations (AT3G20440)
• CantataDB: Link to cantataDB annotations (CNT0000755)
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019440691.1)
• Pfam: Carbohydrate-binding module 48 (Isoamylase N-terminal domain) (PF02922.17)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;