| Id Trinity | TRINITY_DN49003_c0_g1_i6 |
|---|---|
| Name Transcript | Ll_transcript_331558 |
| Sequence | GGATGTTAAGGCATACCCAACCACCACTTTCTGTGATTCTGAACCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAAT TTTAACTATGCAGTGGGATAGCGATTCCGATCTGAGCGAGAACGAAGAAGACGCAGCGTCGTTCATCTTCAACCATGACGAAATTGATGTTGCTGGACCT CTTCCTTTCCCTTTCCCTCTCCAAACGGCTCCATGTGGCTTTGTCGTAACCGACGTTATCGATCCCGATCACCCTATCATCTACGTCAACACCGTCTTCG AGATCCTCACTGGCTACCGCGCCGAGGAAGTCCTCGGTCGTAATTGCCGTTTCTTACAGTGTCGAGGACCATTTGCTAAGAGAAGGCATCCATTGGTGGA CTCAACAGTAGTTTCTGAAATTAGAAGATGCCTCGAGGAAGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAAC AGATTGCGACTGACACCTATATTTGGAGATGGTGAGATTACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCAGG GTTTTGGTATTAAAGAATCTGCCAAATCATCAGATCGGTTTAGTTTGTTGCGTCCTCTTCCATTAGGGGACCGGAATGTGACTCATGGAGCTTGTGGGAT ATTTCAATTAAGTGACGAGGTAATCTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGCTTCTGTCTGTAGGCGATTGTATGAG CTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTG GATGGGGTCGGCTTGCAAGGGAGCTGACAACCCTTGAAGCAGCAGCTTGGAGCAAATTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTTAG TGCCTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAAT CCTGAGTGGCGACATGTCCAGGTGACCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCATGTGTTAATGGTTCTCATTTGGTTGTATTTGGAGGCT GTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGAACTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCGAG ATCATGGCATAGCTCCTGTACTCTTGATGGTACTAAGTTGATAGTGTCCGGTGGCTGTGCTGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGAT TTGTCAATGGAGAAACCTATCTGGAGAGAGATACCAGTGACATGGACTCCACCTTCTCGTCTGGGCCACACACTATCTGTTTATGGTGGTAAGAAAATAC TAATGTTTGGAGGTTTGGCGAAGAGTGGACCTCTGCGTTTTCGTTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAAGAACCATGTTGGAAATGTGT AACGGGGAGTGGAATGCCCGGTGCTGGAAATCCTGGAGGCACAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGGAGAATTCTG ATATTTGGCGGGTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATCCTTGATCCGACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCTG GGTGCCCTCCGAGATTTGCTTGGGGACATAGTACATGTATTGTTGGAGGAACAAGAGCGATTGTATTAGGCGGTCAAACCGGGGAGGAATGGATGCTAGG TGACCTCCATGAACTTTCCTTGGCAAGTTCTGCCATATAGATCCAGTGAATAAACTGCATGCTGTAGTGTAGGGGATGCTAGAGACTCTGATCAAGGTTG TAAAATCATTTTGAGCACAAGAAGGTGGCAAAAGGTTTGTGTTGGGCACTGGTGACAAGCATTGCTCTATTCTAACCGTTTGTGTATAAGTTGTATTCAC AATGGATTTTCTTTTATGGTTGGTTCTGGCTTGAGAAGAACTTCTCAGTGTGTGACACAAACCCATGTTTGTTCTTGTGACGTGTGAAACTTTGCCCTTC CTTATGCACAAAAAGAGTTTCTTCCCCAATAGATTGTCAGTGTATGATAACAAATAGCTAATGTTTTAGGGCAGTGCCTCACTTTATTTCCCCATATTTT GCTTTATTGGAACTCTTTAATTTGTAACAGGACAAAGGATAGAAAAAATAAAAATGAGACCTGGAGGTAAGACTCAAATCCTTCAAAAAACTTATTCGGT TGTTGAAGAAGGATGAGATTCAATAGGTATGTGGTTAGTGGTTACTTTATTGCTTCAATACAACCGCAAAATTGTCCTAGTTCTTCACTTCTTTGATTCA TAATCAATTACGCAACATCCATATTCAATTGTTAATCGTTTGATAATAGATTATGTAGGGTGAATGATCAATTAATTTAAGCCTAAAACTAGTAACTCGG ATGGTCGATGAGTTGGATTGATCAAGTAAATAAAAAAATATTTTTTAAAAAACAACGAAATTGATGTCCTTTTTCAGTGAAAAATCA BLAST |
| Tissue | pods |
| Gene name | LI_gene_165730; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_331558
| Blastp | Adagio protein 1 from Arabidopsis with 82.84% of identity |
|---|---|
| Blastx | Adagio protein 1 from Arabidopsis with 85.1% of identity |
| Eggnog | Component of an E3 ubiquitin ligase complex that plays a central role in blue light-dependent circadian cycles. Acts as a blue light photoreceptor, due to the presence of FMN, that mediates light-regulated protein degradation of critical clock components by targeting them to the proteasome complex(ENOG410XRGE) |
| Kegg | Link to kegg annotations (AT5G57360) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019430611.1) |
| Pfam | PAS fold (PF00989.24) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |