| Id Trinity | TRINITY_DN49020_c0_g1_i8 |
|---|---|
| Name Transcript | Ll_transcript_332219 |
| Sequence | AAATGATCCCCATCCCATGAAACACAACCCCTCCATCTTCTGGTATTCCTATTCTCGTTTCTCGGTCCTTCTCCTGCACCAACATCGATAAATGTTTTTT TCTCTCTTAATTCCCGTTTTACCCTCTACCTCTTTCGTATTCTTTCTTTTGAAAACGGACATTTCCTCTCTGATTCTCTCTGTTTATTTTTTCATATCTA TGTATATATATTAACCTGGTCTATTTTCATTTTCGCTTATAAGTGATTATTTTCGTTTTCGCTTTCGCTTTTCATTATTCATCGCAAACAAAACACAGCA ACACTCTCCAATATTCCAAACACATGTCATCGCTTCGTTCTAACACCATATTCTTCTTGTGATCATCACCACCCATGTGAGCCCATTTTTCATTCTTCCT TCCTTTTCTCTCAAAAAAAGTTGTTTTTTTGCTTCTTTCTTCCAACACTTCATTTCTCAATTTCATCTATTCTGAAAATATACACCTTTTATGTGCTTTC CACCCTTTTCTATTTTTTGGGTTTGTTTTGAATTTCTGTTTTCTTTTTCGGTTTCATTTTTATTTGCAATTCCAATTCCTTTGAAAGAACAGGTTCATTG GGTATGGATTGGGATCCATGTTGTATCTCTCGGTTTTCGTAAACTTCTTATTAAATTATCTCTATCTGGTTCTCATTATTGAGTGGTTTGAATCAAGTTA TTATATATTTGATATTGGTTTCTGTGCTTATATATATAGTTTATACTCTGGGTGAATTCTTCGTCCGGGGATAAAAAAATTGGATTTTAACACATACCCA GTTCCTAAAATGTTGTTTATTTGAAAGGGTTTTAATGGGTTGAACTTCAAGAATCATGGGTAGCTTCAGCGGAGATGAGGAATGTGAGTTTTTCGACGCC GTTGAGGATATTGTGTCTATTGCTGATGAAAAATTGGATGGCAAAAACAGTGATTCTAATGCTAAAGAAGGAATGTCCAATGGTTTTGATTATGATTTGT GGATTAGGAAACCGAGAAGTGTGAGAGAGCGAAGGAGTATGTTTATGCAGAGGATGGGGTTGAGGGTGACTGAGAATGGAGTTACAAATTCAGTGGATAT GGGTGGTGGTGGTGGTGTTGAAGGGGAAAAGATGAATAATAGTGTGAATGATAGTGATGGGGTTGTGGATAGAAATTGTGGTTTTGAGGAGGAGTTCTGT TCGAGCCGGTCATCGGTGTCTTGTTGGCCTACTTTGAATTCTTCGCAGGAGTTTGGTGTGATGGAGAATTTGCCTTGTCACCTGGATCAGGAGGGTCAGG ATAGAAAGATGAGTGATGGTGGTAGAGATAGGGATTCGGATAGGTCGGTGGTTGCTGAGGAACTTGAGGATTCTAAGAACACCTTTCAACGTCTGACGAG TAGGGAGTTTGAGGAGATCGATGCGGATGCTTTATCCAAGAAGTCCAACAGGCCTGTAAGGGCTTGGTTAAGAAGATTGCAGTCGATAACATGTATGAGG GATAAGCAAAGTGAAAGTGAAAAGGAACAAGGAGATAGTTGTGCATTCTCAGGGTGTAGGCTTCAGAAAGTTAAGGTTCGCCAATGCAAGAAACAAATGA AGGAACTTTCAGCTCTTTACATGAGGCAAGACATCCAAGCACATGAAGGTTCGATTTTGACCATGAAATTCAGCTCCGATGGGCAGTATCTTGCCAGTGC TGGTGAAGATGGTGTTGTGCGCGTGTGGCAAGTGGTTGTGGACGATAGGTGTAATGAAATTGACATTCCTGAAATTGATCCATCCTGCATTTACTTCACA GTGAATGATCTCTCTGAATTGAGACCACTGTTTATGGACAAGGAAAAACTTACCAAAGTGAAGGGCCTGAAAAAAACATCAGATTCAGCATGCATTATTT TCCCGCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTCCACGGTCATACAGGTGAAGTTTTGGATATCTCTTGGTCAAAGAATAATGTGAG TGAATGCCATAATTTTAGTTATTTATTGAACTTTGAACTAGATATACACTTTGGTATATAGACTAAATTTTGGGGACATTGACTTGGTTTTCATTTTCTT TTTGGATGCAGTATCTTCTGTCATCTTCAGAAGACAAAACTGTCCGTCTATGGCACGTGAAAAATGAAAAATGCCTGAAAATTTTCTCACACAGTAATTA TGTGACATGCATACAATTCAATCCCATGGATGACAATTATTTCATTAGTGGATGTATAGATGGAAAAGTACGCATCTGGGCAGTTCCTGATTGTCATGTT GTTGACTGGATTGATACTAGAGAGATAGTGACTGCAGTATGTTATCGGCCTGATGGGCAGGCAGGGATTATCGGCTCCATGGCAGGCAATTGTCGATATT TTAATGCATCAGAGAATCAATTGCAGTTAGATTCCCAACCATGCTTACTTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTAGCTTTCAGTTTCTTTT ACAAGATTCTAACAAAGTTATGGTTACTTGTGCTCATTCACAAGTCAGAATCCTTCATGGGCATAATGTGATTAGCAAATACAAAAGCCTAAGTGGTGGG AGTGCAATGTCTGCATCATTTACTTCTGATGGGAAACATATATTATCTGCTTGTGAGGACTCTAATGTTTACCTATGGAACCTTAGTCAGGATGAGCCTA GTCCCACAAAAGTTAAGAAGATTACATCTTGTGAGCGGTTTTTCTCAAATGCATCTGTCGCAATACCTTGGCATGGTTTGAAATCTCAAAATACTGAAAA TGGACTTCAATTGGATGTCTTGGATAGAAGATCGCCTCTAGGTATACGACTCAGTCCACCTGCTTCTTTCTCTCTGGACCAAGATTTTTTCTTGGAGTCT TTTCCCAAGGGATCTGCGACTTGGCCTGCAGATAAACTTCCTGTTTCAAGCTCCAAGGCTAAAACATCTGTGATGCATAAATCTGAATATAAGTTCTTGA AATCTTCTTGTAAGGGTACCTCCCATTCTCATGCGTGGGGCATGGTGATTGTGACTGCAGGATTGGATGGACGAATAAAATCATTCCACAATCATGGGTT ACCTGTACCTGTTTGAAAAGATGTGGCTTTGCTTGGTTGGAGAATCTAATCAAGATTCATTGCTGTTCTTGGAAAACCGCATGCTGCTAATGTTGTGAGG TTCAACAGCGATGTCGACTTTGCCAGCACCAGTAACAATGCAGGTTGCGTTCAATCCTCAAGCAGGAAATACAATTGTGATGAGTGAGGAACTTTGGCTT TCAGGTGGTCCCCCTTTAAGATTTCAGGGGATTAATTTTACCTATTGGTTCATGACAAGTGGTGGTGTTACTGTGGTTCTAATGTAATCCTAATTGAAAT GCGTTAGTGGCCAGGGTTTAGGTTGTCCCTGTATGCAGTCTAAATTGCCTTATGCTATAACAAGAATCTAATGGCCCCTAAACCATGTGATATTAACTTG GTAGACGGCCTACTAGATATTATTTTGATATGTTGTCGCCTTGTGGGACCATAGTAGACCTTCATGTTTCCTTAAGATGAAATGGTGAAATTCTAGAGCC GGTGGCTGAAGTTTGCTTTGATCAAAATGCTGAGAGCGGTGTTGACGATCATTTTTGGCAGCGCTAAACTAATTGAATCTCTTTTTCTGCCAATCTTCCA CTCCACCATATGGTAGGGCCTGATATGCTGGAACTTAATGGGGTGCAGAGCTTCATGAATAGGTGCTTTTATATCTACTTCATGAATAGGTTGCTTTTAT ATCTGCTTCATGTATAGGTGCTTTTATTATCTACCTGTTACTCCAATGATATAAACAGTAGTACATGCTACCAATCAGATTTTCTTCTCTTATGTCATTA TTGGCTTGGAAGTTTTGCTGATTGTCAGAGCCTCTTGCAACTCCTGCAGTGCTGACAAATATCATTGTTAAAAATATTCTGTATATGGTCTCAAATTTTA GGTTGACATTACTTTTTGATTAGTTGAGTTACTAAGCTCTTATCCTTTGTAATATAATTATTATTAGTTTCATTTTGGTTTTGCTAAATACTAGATATGT AAATATGTAATTTGCTCTATGTAAGTAAAATTGTGTTGCCATGGTCCCTGGTTTATGGAAACTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_165848; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_332219
| Blastp | WD repeat-containing protein YMR102C from Saccharomyces with 25.88% of identity |
|---|---|
| Blastx | WD repeat-containing protein 44 from Homo with 35.59% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (YMR102C) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019415404.1) |
| Pfam | WD domain, G-beta repeat (PF00400.31) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |