Ll_transcript_330097

• Id Trinity: TRINITY_DN49027_c4_g1_i1
• Name Transcript: Ll_transcript_330097
• Sequence: ATTTTTTTGACTGATGTGGCATGTTGTTATTGGTTTGGTACAAGTTTTGGGACAGAGTTTGGGACAGCAGATCCTGGTCCTTTTTTGTAGGCAGGTATTT CTATCTTTGTTTCTCCTTGTATAAGAATCTGGCTCTACCCATTAAAATTAAGTATGTTAGAGATATATTGTCTGATTTTTATGGAGTCATAAGTCGTAAG TGGTTAGTGGTTAGGACGGACTGTTTAAGGAATAGAGTGATAAGGAGGTTGAGTTTCTAATCAATCCACTACAAATACCAACATAATAACATTTGACTAT AAAAAATATATTATGCGCAATCGTCAGTGGCTTCTTAACAAACCCAGTCCTTGGGTACTTCATAATGTTGCTTGTTGCTATCCTTTAGATACTGTATTAC GAAACTAGTTCTTATTAGGCTTTAGGTATTCTTTGATTGGTTGAAGAAATATTGCATAAAGCATCTAAGTTATTGCTTTTGGTAGTAAAAAACTCTGCAT TCTTTCAATTTCAAACCCTTCCTATATTTTCTTCATCTAGCCCACAAATTAAGATCGTACATACAGATCAATGAAGTAACTAAAAATGCAACATAGAAAG CATCTGTGTAGTGTAGTATCTGAGAATTTGAGAATTTGATCATGATCTTTACTGCATATGATAGTTAAGAACACAGCATATACACAAGGGTTCCATTCTG ATACTCACCATCAACCAAGATACTTGTGAAGGAACCCAATGATTTGAGATTCACAGACATGAATGTAAAAGCAACAAACTTTTTTTGGGTACTCAAGATT AACAATCAGCAGAAGTGGGAAAAAAAGAGTATTACTATTCCAGAAGTTGATCATAGTGATGAATAAATTAGTCAAGCATGACCACTTTGAGAAGTACCAA CTATGTCTCCATTTGCATTTGAATCACCTAGCTCTTCACATGCACTTTCAAAATCACCTTCATCTGAATTGCCACCTTCACTACTCTCCGAAACTCGAGA ACTCGAAGGAAAAAAGTAATTCCATGATATCTGAGCATGATCAATTACAGGTACAGGGATTTGATGAGGTTGTTGATCGAAAGTATCATCAGCTTTGCAA TCATCCAACTCAAGCCTACAAACAGGACAGGTTTTTTTATTGTTGATCCAACGAAGAATGCATTTGTAACAGTACGTATGGTTACATGGAAGCTTGCTTG CTTCATCATCATCTTTAAACTCTTCCATACAAATAGGACAATTGGGTACTTTATCTTTCTCATCCAACTCTGAGAATTTCACCATGCTAATGAGAGGATG GTCATGTGTATCATGTTGTGATGATTCATCGCTAAATAATCCTTCAGTACTCCTTAGCATTGAGGTTGAGGATGTCATAATCAATGCTCGTGAAAGTGGA AGCGGTTCCCATGGAAGCAGTGGCAGTGGCGGTGGCGGCAGTGGAAAATCTTCTTCCCATGTATTAGTACTAATTGGTGGTGGTGGTGGTGACAGTCGTG GAGAAAATTGGTGTGGTGATGTTGGTGGTGACAGTGTCATTGGTGATGGTGCAAAAAAAGCATCCCATTGACTATCAGTAGGAAGTGATGGTGGTGGTGG TGGTGGTGGTGGAAGAGGCGGCGGAGGTGGAGAAAGTGGCGGCAGCATTGGGGGTGGTGGGAGAAGTTCTTCTTCCCATGTAGCATTAGTTGTAGTTGAA GTGTTAGGTATGATTACAGATTCTGTGTCTGAATCATCAGAACTTTCTGCATTAATTGGAACAAAACATTGCTGATACCACCTTTGGGAATGGCCTCTGC CACCGTTCACTGGCATCACTTGTTCTTGTGTTAAGGCCTGAAAATAGAAATCAGATCATAAGAGACTTTTTTACCATACAATAATGAAATTGATTCATTG TGTTTGTTATAGGAACAAGTCTTTCACTTTTATGTTTTATTATTTTTATTACTTTACATGTTCTTCTCCTTGTTCATTAAGTAATGCTATCTCTAGTTTA ATTTGTAAGTGACACACTCACACCTCATCAAACACAATGGAAAGGGACTGAACCAAAAGGAAACAATAACTTTAAGAAAGGAACGACAGAAGGAGCA
• Tissue: pods
• Gene name: LI_gene_165921;
• Additional information: -

Expression of Ll_transcript_330097

FPKM

• PAB: 0.2
• PNAB: 0.1
• PS1: 0.1
• PS2: 0
• PS3: 0
• PW1: 0.2
• PW2: 0
• PW3: 0

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_330097

• Blastp: Probable E3 ubiquitin-protein ligase RHC1A from Arabidopsis with 40.68% of identity
• Blastx: E3 ubiquitin-protein ligase RNF181 from Danio with 40.68% of identity
• Eggnog: zinc ion binding(ENOG41121N2)
• Kegg: Link to kegg annotations (AT2G40830)
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_019459888.1)
• Pfam: Ring finger domain (PF13639.5)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;
  Links to GO: General; Genes and gene products; Annotations; Ontology;