Id Trinity | TRINITY_DN49052_c4_g1_i4 |
---|---|
Name Transcript | Ll_transcript_331978 |
Sequence | GCAGCAGCAGCAGCAGCAGCAGCATGAGTCAGATGAAATGGAACCCCAATCTGAAGAAATTAGTGAGAAATCCGAAGAAAAGAAAGCCAAAATAGATGGC CTGGAATCGAAAATTGAGGAAGAAGGCGTGACTCTGGACGTAACAGGGAAGAGCTTGGAGTTCCCGTCATCCTCATCATCATCACCGGAAAGTAAGAAAG ATTCGGCGGTGGAGAGTTTGTATCTATACAAGAATGTTTATAGTTTGATACCGAAGTCGGTGGGTGAACACGTTCGTTTGAAAACCCTCAAGTTCTTCGG GAACGAGATTAATTTATTTGCACCAGGGTTTGGGGACCTCAATGGCCTGGAATGCTTGCACATGAAGATTTCTTCTCCCGCTATTGGTGGCTTACCATTA CATAAGATGAAGGCTTTGAAAGAGCTTCAGCTCTCCAAAACCCCTCCAAGGCCTTCTGCTTTTCCTATTTTGACTCACATTGCTACTCTCAAACGCTTGA CCAAGCTTTCTATTTGTCACTTTTCTATCAGATTTCTTCCTCCGGAAATTGGATGCTTAAAGAATCTGGAGCATCTGGATCTTTCATTCAACAAGATTAA GAGGTTGCCTGAAGAGGTGACTTTCTTGAGTGGATTGATATCCATGAAAGTTGCCAACAATAAATTGGTGGAACTACCATCAGCAATGGCATCTTTGTCC ATGTTGGAGAGTTTGGACCTGTCAAATAATAGGTTGACTTCGTTGGGATCCATTGAACTTTGCTCAATGCATAGACTGCGGAATTTAAATCTTCAGTACA ATAAGCTGCTAAGCGTCTTTCAAATACCTCCATGGATATGCTGTAACATGGAAGGGAATGATGGAGGTGGATGCAACGATGATTGTAGCAGTTATGTTGA AATGGATGTCTATGAAAATAGTTCACAGGAAAATGATATTCATGGCCCTCATAACACCTCTTCAACTTTATTAACTAGCTCCTCATCTAGCAGTAGATGT TTTGCAGCCCGGAAGTCAGGTAAGCGGTGGAAACGCCAGTATTACTTACAGCAGAGAGCTCGACAAGCATGCTTGAACAGCAGCAGGAAGTGGAAAGGTG TAGATCATGATCAGTTGCTGAGCAAAAAGGTTCACAGAATTTCTGAACCAGAAAATGTAGACAGTCTTGCTTCTGAAAGTTGTAGAGAAACTGTATCAGA CAAAGGAAACCTGGATGAAAATAAAAAAAGAATATTTTCTGAAGAACCAGTGAACAACAATTTAATTGATGTTGTCAATGATGATGAAGTTATTATTAAA AAGCCGTTTTGTCCAGAAAGTTGCTGCACCGCGGAAAGTAAAAATGAAAAAGATACATCCTTATGCTCCGTAGAGAATATGCCAACTGAACTGGATGAAG CATCCTGTTCAGAAGTTCAGAAGTGTATTTCTAAATCAAAGAGGCCCTCAGATCAAGATATTGATAATCCCAAACCGTGCAAATCTAGGAAACCGATTGA CAATAGCTCATTGTTGTCTAGCCAGTACAGTAAGATCTCATTCTGTGGCATTGAAGACCATCTATCCGATGGCTTCTATGATGCAGGACGTGATCGGCCC TTTATGCCACTTGAGAATTATGAGCATAAACAGTGTTTTGATTCTCGTGAAGTTATTCTGTTGGACAGAAAAAAGGATGAAGAGTTGGATGCTGTGTTGC TCTCTGCTCGGGCATTGGTCTATAATTTGAAGAACCAGGCTGTGGTTTATAACTTGCAGGCAGTATCACTGCTTGCGCTCTTTGTATCAGATCATTTTGG TGGCAGTGATAGAGGTGCTATTATCGAAAGGACAAGGAAAGCTGTTTCTGGTTCAAACTATAATAAGCCTTTTGTCTGCACATGCTCAGCTGGGAGCAGC ACTGATATAAGTGCTTCAGACAAACCAGTTGTAAACACCACAGAAGATATTACTCTTCCCATGATTTCTGAAAAATCTCTTCATTCTATAAAGAAAAGGC GAAGTTCAATTGTAGTTCCAATTGGGTCTGTGCAATTTGGTGTATGTAGACATAGAGCTTTGCTTTTGAAGTACTTATGTGATCACATGGAGCCACCAGT ACCTTGTGAGCTTGTTAGGGGTTACCTGGATTTTTCACCACATGCCTGGAACATCATTTTGATTAAGAGAGATGGTATATGGGTTCGAATGCTAGTTGAT GCATGTCGGCCTCATGATATAAGAGAAGAGAAAGATCCTGAATACTTTTGCAGGTACATACCTCTTACTCGAACAGAAATCTCACCTTCATGTAGAGAAA CTCCTGGACCTGATCATTCCTTTCCATCTCTCTCTGCTTGTAATGAGCTTGAGAAAAAAACTTCTACTACTTTAGTCCAGTGCAAACTTGGATCAGTTGA GGCTGCAGCCAAGGTGCGCACTTTGGAAGTGCAGGCGAGTTCATCTGAAAAAATTAAAAACTTTGAATATAATTGCTTGGGAGAAGTTAGAATTCTAGGT GCTTTAAAACATCCCTGCATAGTGGAAATGTACGGACACCAAATATCATGCCAATGGACTCTCTCATCTGATGGTAATCCTGAGCATTGTGTATTGAGAT CTTCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTAAATAAGCTATCAGAAGCTGATGAAAAGCATGTCCCTGTGGACTTGGCGTT TTGTATTGCCAAAGATGTCGCATGCGCTTTGTTGGAACTGCATTCGAAGCACATAATACACCGTGACATAAAAAGTGAAAACATTCTTTTTGATTTGGAT AAGAGAGACGATGGAATTCCCACTGTTAAGCTCTGTGATTTCGATAGTGCGGTGCCACTAAGATCACCTTTGCATGCATGCTGCATTGCTCATGTGGGAA CACCTCCTCCATGTGTATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTCATGCAGACGATGCATGAAAAACACACTTATGGATTGAATTCTATGAT CTTTTTTACCGGGCACTTGTTTTCTTTATATTTTGCCAAGCTAAGAAGTTCAGTCCAGTCCATCTCCCTCTTTTTTTTTGTTAGAGGTGCAAATCATATG ATGCTTATTTGAATTATCATGTCTATAAGATGAGTAATGTGGTTCATTCCTTTTTTAAGCAATAATGTATAGTAAAAATGATCCAGCTGCTGTGACCAGA CATAGTTGATAGTACTATATAGTTGTTGTCTTGGGTTGTAACATTTTTTTATCTTGTAACAGGAAGCTGATATTTGGTCATTTGGATGTTTACTTTTGGA GATGCTCACTCTACAAATTCCATATTCTGGAGTCTCTGATTCAGATGTCCATGACAGTCTGCAGATTGGTAAACGACCAAAATTAACTGATGAGCTAGAA GCATTGTGTTCAGTCAATGAACCGACAATGATTCAATCTGTTAAAGTGGAAGAAACAGATGCTGAGGTAGATATGTTGAAATTCCTTGTTAATTTGTTTG GTAAGTGTGTCGAAGAAGATCCAGCAGAACGTCCTACAGCTCACGAAATCCATGAAATGCTGCTTAAATACAACCCCCCTTCAAGAACAAGATGTTAAGA AGATTTAGGTGGAGGGTTATTGGGGTGGTCCTGTCTGGGCCAAATTTTATAATAACCCCTTCGTGTTATATTATTAGAAAATAAAATGTATCCATTCTTT TCAGTTTTTATTTGTAGCGTTAGGACTTGCTCATGAATAATTAATTATTGTTATCAGGTTTAGTGTGTTCAGTGAGTTATCTCCTGTACATTTTCAAGGG GTTAAAATTTGAATCCAGCCGGCTCTAATGTAATCTGTTTGAGATCTGTATTTGTAATGTACAATCATTTTGTAAGTGGATATGATTAATTTATTCATAC CATTCAGCTCTATGCTGTTGTTAGTATAGCATGTTGTCTGCTCAAACTTGGTACTTCTGTGTTTTTTTGTTGCTTTTTTGAAGAATTTTAGAGAACAATG CTTTCTTTATGAACATATTTTTTTGTAAAGCATTATAGTATTGTTTCGTTTGGTTGTAATAAGACATGGTTATTGTTGTTGAAGTAATTTTAATGAACAG GATAGATGTAAG BLAST |
Tissue | pods |
Gene name | LI_gene_166166; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_331978
Blastp | Leucine-rich repeat protein SHOC-2 from Gallus with 30.93% of identity |
---|---|
Blastx | Putative serine/threonine-protein kinase PRKY from Homo with 26.87% of identity |
Eggnog | leucine Rich Repeat(COG4886) |
Kegg | Link to kegg annotations (423894) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019427520.1) |
Pfam | Leucine Rich repeat (PF13516.5) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |