| Id Trinity | TRINITY_DN49072_c0_g1_i1 |
|---|---|
| Name Transcript | Ll_transcript_330700 |
| Sequence | TTGATCGAATGGGAAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCAACGAGTAGGCAAGTGACGTTCTCGAAGCGAAGGAATGGTTTGCTGAAGAA GGCGAAGGAACTCGCGATTTTGTGCGATGCTGAGGTTGGAGTTGTTATCTTCTCTAGCACCAGCAAACTCTACGATTTCTCCAGCACCAGCATGAAATCA GTAATCGAGCGATACAACGAAACAAAAGAGGGGCATCATCAACTTGGGAGTTCATCCTCAGAAATTAAGTATTGGCAAAAGGAGGCAGCAATGTTAAGGC AACAATTGCAAAACTTGCAAGAAAGTCACAGGCAAATCATGGGAGAAGAACTGTCAGGTCTGACAGTCGAAGAGTTGCAGACTTTAGAGAACCAATTGGA AATCAGCATTCATGGTGTACGTATGAAAAAGGACCAAATCTTAATGGATGAAATACAGGAGTTAAATAGAAAGGGAAAAATCATACTCCAAGAAAATGTG GAACTGAAAAAGAAGGTCTATGGAACAAGAGATGGGGATGGAACAAACAGAAAACCTGTTCTCAGAAATGATCTACACACAGGGGAAGAATTGAATGTCA CTGTGAATCTGCATCTATAACAGCCACAGGAAGAACAATAAGAGGCAACTACAGGACCTGCAAAGTTTGGAAGATTGCATCTGCATTGAAGCATTTACAG ACTCGGGCTGATTTTTTATGCTTTTAAATTAAGCATGTGGCATATATAGGCCAAAAACCATTCAGCTTAATATTTCAATTTGAATATAATCAACAAAAAC AACTCTAGCATATCCTTGATGAATAACAAAGACAGCAC BLAST |
| Tissue | pods |
| Gene name | LI_gene_166343; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_330700
| Blastp | MADS-box transcription factor 27 from Oryza sativa with 61.29% of identity |
|---|---|
| Blastx | MADS-box transcription factor 27 from Oryza sativa with 57.45% of identity |
| Eggnog | Transcription factor(COG5068) |
| Kegg | Link to kegg annotations (4329771) |
| CantataDB | Link to cantataDB annotations (CNT0001842) |
| Mirbase | osa-MIR444f (MI0006978) |
| Ncbi protein | Link to NCBI protein (XP_019434280.1) |
| Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) (PF00319.17) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |