| Id Trinity | TRINITY_DN49077_c3_g2_i3 |
|---|---|
| Name Transcript | Ll_transcript_331578 |
| Sequence | AAACATATGATTTTCTTCCCAACATTTCCCTATACATCATTTTCCTACAGGTTGTTGCTCTTGTAGAAGGTGCTAGTTCAGTCTTGTCCAGTCCTGAGCC AGAAGAAGCAGCAGTTACAGCCGCACCAACCACCTAGTGTTTCTTCCGTTCGCTGCTCTTCCACAATCATGGCCGATGGCTTCTGGAACCACCACCACCA CCAACCACAGCAGCAGCAGCAGCCCCTTCTTCCCCATCCCGGCATTCTCAAACGACCTCGTACCGAATACGGTTCGTTCTCAATCCATTCTTTTCGTATT TTTGTCAAATTCAAAGCACTTTGTATTTTAGACTAGGCATGAATAGGGTTTATAATTCCTTCAATTTTTTTTTTCATATTCAATCTTTATGGCTTTGATT CATGTTTTGTTTGTTCTTTGATTGGGGAATTTGGTTTGAAAAAAACTGTACTATGTTTATAGAAATGGATAATGGTTGATTGGAATGTTACACGAGATGA TGATGCTCATTTTTTATTGGGGAATTTGGTTATGATTATTCATATTTCTTAACTTAGCACATGACTGCATGAACCTGTTGGAAAAGTGATGGCTTATCTC TGCAATCTACTTGATGGGGATAACCAGATGTCGCATAGATGCAGTTGAACGCACTAATGATTCTAGGGTTTTATAAGTTTAAATCAAAGAAGCTGTTATT TATGACCTTTCAAAGGTTAGAATTAGATATTAGGTGTGCACGATCTTAATAACTAAATTGATAGTGGGCTTCACCGGTGTGTCAAGTCTTAAATCTTAAT AAACTATGTCTATCTGGCATCTCCACGTGTAAGAGACATGCAGACTGTAGAAGCCCTGATAAGGAGAGTAGATCATTTGGAGTGTTGCTCAATTGAGATA GAGGACGTCCAAGAAGAACTACAGGAAAATGCATTAAGAAGGATTTAGATATAAATGGTTTTTTATAAACATGGTTTGTGACGGGACATTATGATGTCAT TTGATCCATGTGTTGAAGCCCCACCTAGAGGAAAAATAATGGTTGTTCGTGTCGTTTAATGTCTTAGTGTTTTCAAGGATTTGCCTTTTGACAATTAAAG CACTGAGTTTCTGAGATGATTTCTCATTGAGCATCACTCGACTTTGTAGAAAGAAGCTGATAATGTACTTGCAAATGCTTGTGACTGTGTTTTCATATGT ATCCCAAACTTTCTATTGCAATGAAATTATGCTTCACATTTTTGTTATAAACATACCAACAACTCTGGAAAAAAAAAGTAATCGTGAAACCTAAGTGTTG CTTTTGCCTATCCATATTTCAGAACGTTCTTTTAGCTTCCTCCTTTTCAAATTATATTTTCAACCAACAAGCCTTATCTTGAGATATTGGGAACAATCCT AATGGTTTATATTGATTTATTTTCTATTGGAGGACCTGTATAAAAAAATATCACAGAGCATTACAATATCAAGATCTTTAATAAAAATCTCATCCTCATG CTCTAATCCTCTGGTGCAGTACCGGAGAATGTGCTTTTAGTGTCGAGGAAATTATTTTCATGGTTAGCCTAGAGAGACAAATTTCATGCTTCTTTAGGGT ACAATATCGAACAAAAATTAGTTTTACACGCTTTTGAGCATACAAAAATTTGAGTGTGCACTTCTTCATGAAGTCAAACTAGTCAGCCCTAAGCCCCTAT CTGTATTAGGTACATTTTATTCTTATTTCTGGTTAAGAGCATTGGACGCATGTTACATACCATTGTTTTAGACCATGGATCTAAAATTGCATGAGTTCAT CGTGAAAGAGGCTGGATTAAATTGTATGGCTAAAATTTACAGGAAAGAGTGTAGTGGAGTTCTACTAACATAATAATGTTTACTTGATTTAAAAAATGAC AACATATGTTCATTGAGTATGCTTGTCCTTGTACATGAAAAGATTCCTAGTGTTGTGTAAGATATAGGCTGCACACAGACCCCATAATACAGCAAAAAAA AAACAAATGGAAGAAGAGAAAAGCCTCAGATAAATAGAACCATGTCTCCAGAATTTTTTTCTTTCCTATTTTTAATTTTTGCATTTTCTTTTTGTAATTT AGCTGAAAATGTTTCCCCAGTCCGGCACAAGTGAATCAAGCAATCTTCGTAATTTTCCTTTTTTAGTTCTGTCTGTATATGTAAGTGCAATGATCTGATT CGGATTGGGATTTTAGATTTGTTTAATGGTGAGTCTGCCTGCAGAAGAGCAGAACAAATAAGCTGTAATCACCCGATCTGGGGCTCAGCTACTTGTGTGA ACATTAAACTAATTTGAACACAATGATAAAAACTAACCTGGTAGGCGTACTTCCATATGCACACCAATAGTTGTTGTGGCCTGCTATGATTGCAAAATGG TAATGATGTTGGCTGTAACGATGACCCATCAGTTTCACCTTTATTTCACCCAACCCCATTATGTTCCCTCAGCAGAGCCCAAACCCAACAGAACTTGTCA GCCAAAGGCCACCATATGAATTAAGGAAGCGGTTTTGCTGCAGAGAACATGGGAGTGACCAAGTCAGTTGGGTCAACCTCCAATAGGTGTTTAAATCAGC TGGCATTACAAATGTTGTACCAATCACCAGTAAGCCCTGATTACCCAGTAGGAAACCCACTAATGAACCTCACTAGAACATGAACAAGGACAATAATAGC TGGAAGAGGAAGCAGAGTATGCAACTGTGTGTTCCCTTTGACTCCACTGGATGTTTTCCTGCTCAACTTCTTCTGAAGGGAATGAACCTCCGACAATCAC TCCATAACTTTAGGGTCCTTCACCAACAAACCCTTTGGGTTCAGCCACAAAATCCTTGGTTCCATGTACATCAGATTTTCCTCTAACACCTTGAAATGCA TTTCTTAGTAATTTTAATTCTGAAACCAATATAGATCCATTAGAACTCCTACGAAGGTTGTAGAATGTGTGCTTTGTCTCTGGCAGGTTGAACTTGAGGG TTAAGTCAACATAGTTTTTTGGGTCTAAGTTGTTTGAGTTGCTGAAGGTTTGGAATGCAATATGTTCTTAGATACTCTAAACAAATCTCATATATAATCA TCGTAATACGGGATATTCTCTTTGTATCTAAGTATCTTCTAGAAATTCTCTATAATATAATTTAAGATCTTCTGAGATACTTTTATATATTCTAACAATA ACAATAGCTAATTTCTTCTTGTATTGATATATTTACTGTCGCGAGATATATTTCAATTCCAGGAGCAAGTTTGAAATGTTGGATGGTGCAACTTGCAGCC CGTTCTTCCTTTTATTATTAGTGCCTTGCATTGGGGGGCACTTGCTCAGTTGCTGAGTTTTGCTACTGTTTGCATACTTGTTTGGTGTATGTATCATGCC TGGTACCATTTAGCTTCTGGAAAGCCCCAACCCATGGTTAAAAGGGTTCCAAAAGCTCAACTATTATATGCACATAGTCTTCTAGTTTATTCAGTGTTTA GCAATATCGGAATAGGAATTATATTATATGACATAAGAGTCTTCGATTTTGTATGTGTTTTTCAGTTTTAGTATTCTTTGTTAGAGAAACGAGTTGTAAG ACCAGTTTTTTTCTAGATATTTCTGCTTCTGGCATGTCTTCAGCTAATGAGATGCATAATTATATTGCTCGCAATGATGACCATACTGCTCACCAAATGT TCAAGGACTCACAAACAATTGAATCCACTTATGATCGCTATCTTCAGAGTGGGCAACCTTCTTCACTTCCTTCTGGGGAAACTAGTACAACTAGTGCTCT TGGATTGGGGAGAGGTGGTGGTCGATTTCCAGGCTATCCACTAGCTGATCCTTCAGTCATGGGGTGTCATGGAGGTGATGGTCGTGATCTTACACCTAAT GGAAGAGGTGTTAATTATGGAAGCCAGCTATCAGTTGATGCAGTTTACAGGCCTGGACCTGAGACAATACCTCTACCTCCGGATGCTTCAAGTACTTTAT ATGTTGAAGGTCTCCCTTCCGACTGCACAAAAAGAGAAGTGGCACATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATC CAAACATCGTGGTGGAGATCCTTTGATCCTTTGTTTTGTGGACTTTGAAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGGTTATAAAGTC GATGAACTCCATCCCGACTCCAGTTACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTTCAAGATCTGGATCTGGTCCTGGCCCTGGATCTCGTGGTAAGA GGTAAAAGCTAGTTTACGCAGGCCATCTGAGCTTTATGGTCATCAGAATGTTGATGTTCTTATTTATTTATATGATTTCGGGGCAAGAATGTTCATGGAC CATTCCTCCCCACTTGCACTATTTATTGCTGTCTCAAAGCCCCTGAGATGCACTTTATTAACCGGCTGAGATCAAAGTACAGTTTCATTTCAGCAAATCT TATAAATGGAGTGTTTATATATATATATATATATATATATATATGTATATATATATATGTATATGTATAGTCTGGTGTATTATTATTCATAAATTTAGTA TGAACCTGCTGTCCGGTTTATTGTATGGTATATTTTGAGTTGCCCAAATAGCTGTATTTTATTATTATTCTTTGCTTAATCAATATTACTGGTTATCCTG GTATGTACCTACACTTGGGTATGTGCTTTTAGGGAGCTATATTATATACAGGTGTGGGACTGGGTAAATATGTGCATCTCACATATCTCTTATGCAGTTA ACATTAAAA BLAST |
| Tissue | pods |
| Gene name | LI_gene_166387; |
| Additional information | details; |
| PAB | abscising pods |
| PNAB | non-abscising pods |
| PS1 | seeds stages 1-3 |
| PS2 | seeds stages 4-6 |
| PS3 | seeds stages 7-8 |
| PW1 | pods wall stages 1-3 |
| PW2 | pods wall stages 4-6 |
| PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_331578
| Blastp | RNA-binding protein 2 from Medicago with 68.83% of identity |
|---|---|
| Blastx | RNA-binding protein 2 from Medicago with 68.72% of identity |
| Eggnog | - |
| Kegg | Link to kegg annotations (MTR_1g099190) |
| CantataDB | - |
| Mirbase | - |
| Ncbi protein | Link to NCBI protein (XP_019413758.1) |
| Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (PF00076.21) |
| Rfam | - |
| GO | Links to GO: General; Genes and gene products; Annotations; Ontology; Links to GO: General; Genes and gene products; Annotations; Ontology; |