Id Trinity | TRINITY_DN49093_c2_g1_i3 |
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Name Transcript | Ll_transcript_332315 |
Sequence | ATAAGGGCTCACGTCACAAAGCTTTTTTCCCAAACTACTTGGAAAACTCTCCCTTTGACACTACCACACGAAGGAGCCGCCACTTTCCCTTCTCTCTCAC GTTCCCAACCCTTCTATGTTTTAACACTGTTGCTCAACGATGCAGGTATCTTTTTTTAATTCCAATTCTTTTTTACTTCACAGGCTTCATCTTTCGAAGC TCAATAATCAGATTTCTACAACTACTTCTGTTTTCGGTGTTTATTATAATCACCATTCGTTTAAGGAGTAATTGTTCAATGTGTAAAAATTGAGACTTTT CACTTTAACAGTGTACTTGTATTCAGTGAATGTATCAGACTCGGAGAGTTAGTTGCATTTTGATATACTTTATGTTGTTTGGTGGTGTACAAAGCAGTGA GTTTATCAAAATTATGAATAGATTAAAGGGTTTTGGAAATTTTATTTCTTTTCGTGTGCTGTTTGTACATATCAAAGTTTCATTATAAGGGTTTTTTTGG GAATTGTTGTTTGGACATATCATCTTTTGGCTCAGCACAATTTAAGAGCCTTCGGAGAGCGAGTTTGCTGTTTGAATTTTGAATCATTGGAATCAGCTTC AGGCCTGGCCCCTTTTGGTTTTATTAAAATTATTTCGGTTGTCGTGTTCAGCTGTTGTGACTGATATGGGATAGAATCCCGGTCGATATTATGGCTCCAA TTAGGGTTGTAAAGTAAAGGGAAAGAAGTGAATGTTACGGTCGTGCAGTCATGCTGGATAAATAAGCAAATATGCTTTGAAATTGTCAGAAACTCGGGTG ATACATCAATCTGTTCTGTATTTTGGATGTTTCTAAATGACAGGTTTAGTTTTGAATTGCTCGGCAACATTTGCTAGTAAGCTTTTTGCTACCTGGTTGT GCTCTTTCTGGAAAAGGGGTGATGTCAACATTTTCTTTCTTTGGTGAAATTCCATTTCAACGTAGCTGATTTGATATAAGACTTCTTTTTGGTGACTATA ATAAATGCATGCTTAAAGTTTTTCATACCTCAGCAATGTGGGTAGTCTCCTAGCTTTATAGCTGATGGTATATTGTCATGTAAATACTAGTTTCAAGATT GAGTTGGGCTGGTGCCTGCTTTTGCATTTTGTTTGAAGCTATGAATATGTTGCGATCGAAGCAGATCAGTGCCCTTTCTAGCAGTGCTAGGAGTTTTTTC CTTAGTGGTTCACGGTGTAATGGAGCGGATGGCAATTCATGCACTTGTGCCGAGGATGAAACATGCGTGTCAAGAAGACAGGAGAGGAAAAACGAAATTT TAAATGTTCAGAAGCCAGCCTCCATAGTATCCAAAACTACATCTGGTGTAGAAGGAAACGTGATTTCAGGAAACATAGTAAATAGACCAGCTTCCACCAA GGGTGAGTTAGTTGTTCGATCTGTTTCTGGACAACAAGTCAGGTCTACTCCAAGCCCATCAAGTACATCAGCTTCTGTTACATATGCTTGTGTGGCTGAT AGTGTTCAGAACCATGTTGATACATCTCTTAATGCTGACCAGTTTTTCCGGGCCGGTATTGCTGCTGTCAGTTTTCTTTCTGACTTAGTTAACTATAAGC TTCCTTTATCAGATGGGATGGGAATACTAGGCAACTCTAAAAATTGTGTGGTTGATCCTGCCCGGACCCTACCCAGCATCAGATCTTCAACGGTGAAACA AATTAGAAAGGAGGATTTTATTGCTGTTCATCCAAAACCACCCATTTCTGCTCAGCCAGGGCCATCAAACCATACTAGTAATTACCATGGTGCAAAGGGA AAAGGTGATAAACCAAATTCATCTAGAGGATATAAACATGCTGCTTCTTCAGGGTCAGAGAAGTCAGGGGTTACTCCAAACATTCCTGTAAATAATAATG ACCGTAGAGCCTTGCCACCGAGAACAAGAACTCAGTCAAACCGCTCGGTGACAAATTTTGGTTCCTACATACAAAATTCAAATCCACAGGTGTCGGGTTC ATTCAAGGAAAGTTTTAATAAACACTCCAGGGATTTGAAAATGCCAGCTGGGATTGCTTTTTCAAACAGGCATTTTTCAAACACAGGGCATGCTGTCGAT GTGGTTTCAGATATACTGAGACAGTTAAGGTGGTGTCCTGCTACAGAGAAGGCTCTTTGCAACCTTAATTTTTCATTAGATCCATATCAAGCTAACCAAA TCCTCAAGCAACTTCAAGACCATTCAGTTGGTTTAAGCTTTTTTTACTGGTTAAAGCGACAAGCAGGTTTCTTTCATGATGGGCATACTTACACCACCAT GGTTGGTATCCTGGGTCGTGCAAAACAGTTTGGTGCAATTAAAATATTGCTGGAGCAGATGGTCAGTGATGGATGCAAGCCCAATGTTGTAACTTATAAT CGTTTGATTCACAGCTATGGCCGTGCGAACTACCTGAAAGAAGCACTGAATGTGTTCAATCAAATGCAGGAGGTAGGATGTGAGCCTGATCGCGTGACTT ACTGCACACTCATTGATATTCATGCCAAAGCTGGATATCTTGATATTGCCATGTCTATGTATGAACGGATGCAAGAAGCTGGCCTTTCTCCCGACACATT CACTTACAGCGTGATAATCAACTGCCTTGGAAAATCTGGTAATTTAACTGCTGCCCATAGGCTATTCTGTGAGATGGTTGATCAGGGTTGTGTTCCTAAT CTAGTCACCTATAATATCATGATTGCTTTGCAAGCTAAAGCAAGGAACTATGAGACAGCATTGAAACTATATCGCGATATGCAGAATGCAGGATTTGCAC CCGACAAAGTCACTTACAGCATAGTAATGGAGGTGCTTGGCCACTGTGGGTATCTTGAGGAAGCAGAAGCAGTTTTTGTTGAGATGAAACGGAAGAATTG GGTGCCGGATGAACCTGTTTATGGTCTTCTAGTAGACCTGTGGGGTAAGGCTGGTAATGTTGAGAAAGCTCGGGAATGGTATCAAGCAATGCTGAGTGCA GGTTTGCGTCCAAATGTACCAACAAGCAATTCTCTTCTCAGTGCATTCCTCAGGGTGCATAGGTTGTCAGATGCATATAATCTTCTTCTAAACATGGTGT CTCTCGGCCTAACCCCGACTTTACAGACTTATACATTGCTCCTCAGTTGTTGTACAGAGGCACAATCATCATATGATATGGGTTTCTGTTGTGAGCTTAT GGCAATTACTCGCCATCCTGCACATACATTTTTATTGTCCATGCCATCAGCGGGACCTGATGGTCAAAATGTCCGTGATCATGTAAGCAAATTCTTGGAC CTGATGCATTCAGAAGATAGAGAGGGCAAAAGAGGGCTAGTAGATGCCGTGGTGGATTTTCTTCACAAAACTGGACTCAAGGAAGAAGCTGGTTCTGTTT GGGAGGTGGCGGCTCAAAGAAATGTATATCCTGATGCTGTCAAGCAGAAAAGTTCTTGTTACTGGCTTATAAATCTTCATGTTATGTCGGATGGAACGGC TGTAACAGCATTGTCTAGGACACTTGCTTGGTTCCGCAGACAAATGCTGATATCCGGGATTGGCCCCAGCCGGATCGATATCGTTACTGGATGGGGTCGT AGGAGCAGGGTAACAGGTACTTCTTTAGTGAGACAGTCTGTTCATGAATTGCTGCAAATGTTCAGTTTTCCATTTTTCACTGAAAATGGCAATTCGGGTT GTTTCGTGGGATGCGGCGAGCCTCTTAGTCAATGGTTGCACCACTCGTACGTGGAGCGAATGCATTTGCTGTAGTTGGTTACCGTAGAACCATTTTCCCT TCACCTTAGAAACAATTTTGCTGTGGGGAATGAGCTTCTATTGGGATGTTTTATACATTGTATTAATTTTATTTTGCCATGGTGTGTAGTTATCCAAATT AAATAGGTTTAATTTCTATGTTGGGAAAATATTAAACTGAATGCTCAATAGTAGTAATCTTTGTTATGCTTGTGTCACAACACCTCACTGAGAAGTTGAT AGGTTTGTGTACAGGTACAAACTATATATGTAAGTATAAATATATGTGTCTAGCTGTATTCTTATTCAATTTGACTTTGGTTAAAATTTATTGTTGTAAC TGTTTGATTGATTATGCATACAAGTTCTGCATTGTTAAAAA BLAST |
Tissue | pods |
Gene name | LI_gene_166493; |
Additional information | details; |
PAB | abscising pods |
PNAB | non-abscising pods |
PS1 | seeds stages 1-3 |
PS2 | seeds stages 4-6 |
PS3 | seeds stages 7-8 |
PW1 | pods wall stages 1-3 |
PW2 | pods wall stages 4-6 |
PW3 | pods wall stages 7-8 |
Annotations of Ll_transcript_332315
Blastp | Pentatricopeptide repeat-containing protein At1g74750 from Arabidopsis with 64.73% of identity |
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Blastx | Pentatricopeptide repeat-containing protein At1g74750 from Arabidopsis with 64.05% of identity |
Eggnog | Pentatricopeptide repeat-containing protein(ENOG410Z7Z7) |
Kegg | Link to kegg annotations (AT1G74750) |
CantataDB | - |
Mirbase | - |
Ncbi protein | Link to NCBI protein (XP_019435104.1) |
Pfam | PPR repeat (PF01535.19) |
Rfam | - |
GO | Links to GO: General; Genes and gene products; Annotations; Ontology; |