Ll_transcript_293138

• Id Trinity: TRINITY_DN49100_c2_g2_i1
• Name Transcript: Ll_transcript_293138
• Sequence: CTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACAAAAACACTATTCACGAAATCACTATTCACGT GAATAGTATTTCCACCAATATTTAGCCGAAAAGAAAACCAATCAGCTCTTATACAAGTTGTTAGGAAACTACGTAAAAATTTCCAGTCATATTCCTGGAA TAGAGATTTAAATACGGAATAATAACACACATAAAATTGATAACGGAGTTCGGCCAATTATGTCTACATTTTCGGGCTGCTGCAGACATTTTATAGGAAA GGAAAATATATTGTGTTTACAAACACTCACACTCTCACAAACCCACAACCCAATTACACCTAAGAATTTCTCTCACTGAGATTTTCTTATTCTGAGATTT TTTTTCTTATCTCTCACTATACTTTGCTTTGAGAAGCTGGAATGATTTTTTCATTCAGCTTACACAGTTATTTATACAAGTATAAAGCTGTGTGAATACA TGCAAAGTTTCAAGCACCAAAACTTTGATTTTGCATTGCCGGCCTATACCTTAGGCCATTACATTTTTCTTCATTCAACTATTTGCATTTAATGCCATGT TTCAAGGCTTTTCTCTTTGACTTTTCCCATGGGTGACATAGTGTAACAATCTCCCACTTGAAGACTGACTTCAGTTGGTCTTCACACCTCGATCATGCAG CAACCTTTTCTAGTATGTTATTTAAGCAGACTAACTGAAGTTGAGCACAACTTCAGTTTGTCAATAGTCACCACTTTTGTTAACATGTCTGTTGGGTTCT TACTTCCTAGGATCTTCCTCAATGTTAGTACCTCATCCTCAAGTAGAGATTTAATGAAGTGATAACGAAGATCAATGTGCTTTATTCTAGAGTGAAATGT TGAGTTCTTAGCCAAATGTATTGCACTCTGACTATCACTGTGCAAAAGATCCTTCTCTGGGATGAATCCCAACTTTGTTAATAGTCCTTGAAGCCATATC AATTCTTTGCTAACTTCTGTTACTGCTACATACTCAGCCTCTGTAGTGGACAAAACAACGGTCTTTTGTATCTGCGACATCCAACTAACAGCTGTAGTAC CAACAGTAAATATGTAACCAGTGGTACTTCTTCGATGATCAACTTCACTAGCAGAGTCCGCATCTACGTAGCCGTGTACTTTTAATTCACCTTTACTAAA GCACAAACGCTTCTCCTTAGTGCCTCGTAGATACCTCAAAATCCATTTAAAACTTCCCAATGAGCTTTACCTGGATTTGACATAAACCTTCTTAAACCTC CCACTGTATGGCCAATGTCTAGCCTTGTGCATACCATCGCGCACATCAAACTTCCAATGGCTGAAGCATATGAAATCTTAGCCATCAATTCTTTCTCTTC GTCCGTCTTTGGGGCCTGGTCTTTTGATAGACGAAAATGACTAGCCAAAGGTGTGCTAACTGGTTTGGCATTGTCCATATTGAATCTTTGTAAAACACGG TTGATTTACTCCGCCTGAGATAACTGCAAAGTTCCCTTTTGCTTATCTCTCGTGATTTGCATTCCAAGGATCTTCTTCGCTGGACCCAAATCTTTCATGT CAAATTCTTTTGACAACTGCTTCTTCAAGTTTCTGATCTTGACCATATCGGAACCTGCTACTAACATATCATCAACATAAAGTATCAAAATGATATAACT AGAGTTATACCTATTGAAGAAACAACAATGGTCTGCATTACACTTCTGGAAACCTTCCTTGTGCATGAAGCTCTCAAACTTCATATACCACTGTCTTGGA GCTTGTTTCAGACCATACAAGTTCTTCTTTAATCTGCACACCATATTTTCTTTCCCTTTCTCTGGGAAACCTTCAGGTTGATGCATGTAGATCTCGTCAT CCAAATCTCCGTGAAGAAACGCAGTCTTCACATCCAATTTCTCTAGGTAGAGCTCTTCACTAGGAACAATACTTAACACATACCTGATAGCATTGAGCTT CACAACTGGAGCAAAAATCTCAGTGTAGTCAACACCTTCTTTTTGCTGGAAACCTTTTACAACTAGTCGCGCTTTATATCTTTTAGAGCCATTATGCTCC TCCTTCTCCTGATACACCCATTTGTTGTGAAGTGCCTTTTTCCCTATGAGTAACTCTGCTAGTTCCCATGTCTGATTGGAGATCAAAGACTTCATCTCGT CTTTCATGGCAAGTGCCCACTTGCTTGCATCTGTGATGTGACATGCTTCTGCATAGTCTTCAGGTTCTCCTCCATCTGTCAACAACATGTAGCTCATGTA TTTCCTGTTAGGCACAAGGATTCTAGAAGACCTTCTCAATACAGGAGTTGGAGTAGGGAGCTCTGTTATATCAGATTGTTGCTCGATGCCTACTTCTGTT GATTCCTCTGACTGAGGGCTCTCAACTATAAGACTTTCTAGGACATCATCCATATCTGCATAAACGGGCCCACTCAGATCTGAGTTACTGGCACTTGTAT TATGCTTGTCCTTGTACATCACTCTTTCATTGAAGATCACATCTCTATTGTGGATCATCTTTTTATTTTCATCATCCCAAAGGCGGTAACCAAACTCATC TTCACCATAACCGATGAAAGTGCACTTCTTTGATTTTGGGTCAAGTTTGTTCCTACCTTGATCACTAATGTGCACATATGCTGCACAACCAAAAACTCTA AGATGTGAGAGTTTTACCTCTTTTCCACTCCACACCTCTTGTGGTATTCTAAGCTCCAATGGTACCGGTGGTCCTCGGTTGATTAAGTAAGATGTTGTGT TAACTGCTTCTGCCCAGAATTGCTTGGTAGGCCTGACTGCACACGCATGCTTCTGCCTCTTTCAGTCAATGCTCGGTTCGTACGCTCATCTACACCATTG TGTTGAGGCGTACCTGACACAGTCCTCTCCATTCTGATCCCGTGCTCATAGCAAAACTTCTTGAATCTAGTGTCTTCATATTCACCACCATTGTCAATCC TGAGCTTTTTGACCTTCAACCCTGTCTCATTTTCCATCATGGCTTTCCACATCTTGAAAGCTTCAAATACTTCAGATTTATGTTTCAGAAAGTATACCCA TACCTTTCTAGAGTGATCGTCAATAAAAGTCACAAAGTATTATTTCCTACTAATGGATGAGACAGTCGTTGGACCCCAAATATCAGAGTGCACAAACTCG AGTCTCTCCTTCTTCGGGGTTCTTCCACTTTTTTGAAAGCTAACTCTTTTCTGCTTTCCGAATATACAGTCTTCACACATGTCAATCTCAACTAACTGAA GACCTGGAAGTTTGCCCTTCGAGTGCATGAAATTCATCCCTTTCTCACTCATATGGCCAAGTCTTTGGTGCCATAGATTGGGATTTTCATTTATTGCGAC TATAATCAAATGACATGCTCCCACTGTTTTGTAAAGAGTACTACTCTTTTTGCCGCGAGCTATTGTCATTGCACCTTTTGAAATTTTCCATTGATCTCCA TTGAAGATTGTTGTGTAGCCATCACTGGACAGCTGGCCTACTGAGATTAAGTTCTTCGTCAGGTCAGGAATGTGTATGACATTCTTCAGTTCCCAAACAG ACCCGTTCAACTTGATCTTTACTACACCTTTTTCCTACAATCTCATAAGACTGTTCATTACCAAGATAAACTTTACCGAGATTTCCAAAGTCATAATTCT CAAAGAGTTCTTTCTGCGAAGTTGCATGAAATGATGCTCCAGAGTCTAACACCCAAGACTCTTCCTTGTTCTCCAAAGAACATATCAACACATCATTCCC TCCTGAGGTTGAAGCAACGTTAGCCTCATCTTTCACATCCTGTTTCTTCGATGCACTCATAGATTGATTTTTGTAGTGTTCGGTCTTCCCACAGTTCCAA CACTCGATAGTCTTCGAGCTGTTAGAACTATGATGATTTCTAGACTTGGACGGTCTCACCTTTGATTTACCGCGTTCTCTTCCTCTGGTTGAACTCCTAC CTCTTGACTCTGTATGAAATACTGAAAAGGTTGATGATTCACCCGACTCTTTCCGGAGAATCTCTTCATTCAGGACCAAGTCACGAACATCATCAAATTT TAACTTGTTGCTTCCTGATGAGCTACTCACAGCTGTGACAGTAGCATTCCAACTTTCTGGTATGGAAGACAAAAGTATCAAGGCTCGTACTTCTTCGTCG AAATTGATTCCAACTGAACTCAACTGGGTTGTAACTGTGTTGAGTTCGTTTAGATGTTGCGTTGTTGATGCGCCTTCTGTCATCCTTAGGTTGAACAACC GCCTCATCAAATGAACTTTGTTTGAGGCCGATGGCTTTTCGTAC
• Tissue: pods
• Gene name: LI_gene_166568;
• Additional information: -

Expression of Ll_transcript_293138

FPKM

• PAB: 0
• PNAB: 0.1
• PS1: 0.1
• PS2: 0
• PS3: 0
• PW1: 0
• PW2: 0
• PW3: 0.1

Labels

• PAB: abscising pods
• PNAB: non-abscising pods
• PS1: seeds stages 1-3
• PS2: seeds stages 4-6
• PS3: seeds stages 7-8
• PW1: pods wall stages 1-3
• PW2: pods wall stages 4-6
• PW3: pods wall stages 7-8

Annotations of Ll_transcript_293138

• Blastp: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 46.51% of identity
• Blastx: Retrovirus-related Pol polyprotein from transposon TNT 1-94 from Nicotiana with 51.64% of identity
• Eggnog: -
• Kegg: -
• CantataDB: -
• Mirbase: -
• Ncbi protein: Link to NCBI protein (XP_020987654.1)
• Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) (PF07727.13)
• Rfam: -
• GO: Links to GO: General; Genes and gene products; Annotations; Ontology;